Center-Authored Papers

Filters: Keyword is Molecular Sequence Annotation  [Clear All Filters]
ENCODE Project Consortium.  2012.  An integrated encyclopedia of DNA elements in the human genome.. Nature. 489(7414):57-74. Abstract
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Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K et al..  2010.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.. Science (New York, N.Y.). 330(6012):1775-87. Abstract
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Mirus JE, Zhang Y, Hollingsworth MA, Solan JL, Lampe PD, Hingorani SR.  2014.  Spatiotemporal proteomic analyses during pancreas cancer progression identifies serine/threonine stress kinase 4 (STK4) as a novel candidate biomarker for early stage disease.. Molecular & cellular proteomics : MCP. 13(12):3484-96. Abstract
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Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
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Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF et al..  2010.  Identification of functional elements and regulatory circuits by Drosophila modENCODE.. Science (New York, N.Y.). 330(6012):1787-97. Abstract
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Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al..  2012.  The accessible chromatin landscape of the human genome.. Nature. 489(7414):75-82. Abstract
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Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract