Center-Authored Papers

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Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM et al..  2014.  Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach.. Molecular & cellular proteomics : MCP. Abstract
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Paik Y-K, Omenn GS, Uhlen M, Hanash S, Marko-Varga G, Aebersold R, Bairoch A, Yamamoto T, Legrain P, Lee H-J et al..  2012.  Standard guidelines for the chromosome-centric human proteome project.. Journal of proteome research. 11(4):2005-13. Abstract
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Hoofnagle AN, Whiteaker JR, Carr SA, Kuhn E, Liu T, Massoni SA, Thomas SN, Townsend RR, Zimmerman LJ, Boja E et al..  2016.  Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.. Clinical chemistry. 62(1):48-69. Abstract
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Pan S, Chen R, Reimel BA, Crispin DA, Mirzaei H, Cooke K, Coleman JF, Lane Z, Bronner MP, Goodlett DR et al..  2009.  Quantitative proteomics investigation of pancreatic intraepithelial neoplasia.. Electrophoresis. 30(7):1132-44. Abstract
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Brentnall TA, Pan S, Bronner MP, Crispin DA, Mirzaei H, Cooke K, Tamura Y, Nikolskaya T, JeBailey L, Goodlett DR et al..  2009.  Proteins That Underlie Neoplastic Progression of Ulcerative Colitis.. Proteomics. Clinical applications. 3(11):1326-1337. Abstract
Aebersold R, Anderson L, Caprioli R, Druker B, Hartwell L, Smith R.  2005.  Perspective: a program to improve protein biomarker discovery for cancer.. Journal of proteome research. 4(4):1104-9. Abstract
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Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, DePinho RA, Bardeesy N, Dinulescu D et al..  2008.  A mouse plasma peptide atlas as a resource for disease proteomics.. Genome biology. 9(6):R93. Abstract
Pan S, Aebersold R, Chen R, Rush J, Goodlett DR, McIntosh MW, Zhang J, Brentnall TA.  2009.  Mass spectrometry based targeted protein quantification: methods and applications.. Journal of proteome research. 8(2):787-97. Abstract
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Chi Y, Welcker M, Hizli AA, Posakony JJ, Aebersold R, Clurman BE.  2008.  Identification of CDK2 substrates in human cell lysates.. Genome biology. 9(10):R149. Abstract
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Legrain P, Aebersold R, Archakov A, Bairoch A, Bala K, Beretta L, Bergeron J, Borchers CH, Corthals GL, Costello CE et al..  2011.  The human proteome project: current state and future direction.. Molecular & cellular proteomics : MCP. 10(7):M111.009993. Abstract
Anderson LN, Anderson NG, Pearson TW, Borchers CH, Paulovich AG, Patterson SD, Gillette M, Aebersold R, Carr SA.  2009.  A human proteome detection and quantitation project.. Molecular & cellular proteomics : MCP. 8(5):883-6. Abstract
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Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Paik Y-K, Jeong S-K, Omenn GS, Uhlen M, Hanash S, Cho SY, Lee H-J, Na K, Choi E-Y, Yan F et al..  2012.  The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.. Nature biotechnology. 30(3):221-3.
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Jeong S-K, Kwon M-S, Lee E-Y, Lee H-J, Cho SY, Kim H, Yoo JS, Omenn GS, Aebersold R, Hanash SM et al..  2009.  BiomarkerDigger: a versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers.. Proteomics. 9(14):3729-40. Abstract
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Marcon E, Jain H, Bhattacharya A, Guo H, Phanse S, Pu S, Byram G, Collins BC, Dowdell E, Fenner M et al..  2015.  Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.. Nature methods. Abstract