Center-Authored Papers

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C
Tinberg CE, Khare SD, Dou J, Doyle L, Nelson JW, Schena A, Jankowski W, Kalodimos CG, Johnsson K, Stoddard BL et al..  2013.  Computational design of ligand-binding proteins with high affinity and selectivity.. Nature. 501(7466):212-6. Abstract
Smith RD, Damm-Ganamet KL, Dunbar JB, Ahmed A, Chinnaswamy K, Delproposto JE, Kubish GM, Tinberg CE, Khare SD, Dou J et al..  2016.  CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge.. Journal of chemical information and modeling. 56(6):1022-1031. Abstract
D
Jiang L, Althoff EA, Clemente FR, Doyle L, Röthlisberger D, Zanghellini A, Gallaher JL, Betker JL, Tanaka F, Barbas CF et al..  2008.  De novo computational design of retro-aldol enzymes.. Science (New York, N.Y.). 319(5868):1387-91. Abstract
H
Jarjour J, West-Foyle H, Certo MT, Hubert CG, Doyle L, Getz MM, Stoddard BL, Scharenberg AM.  2009.  High-resolution profiling of homing endonuclease binding and catalytic specificity using yeast surface display.. Nucleic acids research. 37(20):6871-80. Abstract
P
King IC, Gleixner J, Doyle L, Kuzin A, Hunt JF, Xiao R, Montelione GT, Stoddard BL, DiMaio F, Baker D.  2015.  Precise assembly of complex beta sheet topologies from de novo designed building blocks.. eLife. 4 Abstract
R
Doyle L, Hallinan J, Bolduc J, Parmeggiani F, Baker D, Stoddard BL, Bradley P.  2015.  Rational design of α-helical tandem repeat proteins with closed architectures.. Nature. 528(7583):585-8. Abstract