Center-Authored Papers

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Journal Article
Dunlop MG, Dobbins SE, Farrington SM, Jones AM, Palles C, Whiffin N, Tenesa A, Spain S, Broderick P, Ooi L-Y et al..  2012.  Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.. Nature genetics. 44(7):770-6. Abstract
Whiffin N, Hosking F, Farrington SM, Palles C, Dobbins S, Zgaga L, Lloyd A, Kinnersley B, Gorman M, Tenesa A et al..  2014.  Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.. Human molecular genetics. Abstract
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K et al..  2010.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.. Science (New York, N.Y.). 330(6012):1775-87. Abstract
Mertins P, Yang F, Liu T, Mani DR, Petyuk VA, Gillette MA, Clauser KR, Qiao JW, Gritsenko MA, Moore RJ et al..  2014.  Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.. Molecular & cellular proteomics : MCP. Abstract
Cheng TH, Thompson D, Painter J, O'Mara T, Gorman M, Martin L, Palles C, Jones A, Buchanan DD, Win AK et al..  2015.  Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.. Scientific reports. 5:17369. Abstract
Schoenherr RM, Kelly-Spratt KS, Lin C, Whiteaker JR, Liu T, Holzman T, Coleman I, Feng L-C, Lorentzen TD, Krasnoselsky AL et al..  2011.  Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer.. Proteomics. Clinical applications. 5(3-4):179-88. Abstract
Hoofnagle AN, Whiteaker JR, Carr SA, Kuhn E, Liu T, Massoni SA, Thomas SN, Townsend RR, Zimmerman LJ, Boja E et al..  2016.  Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.. Clinical chemistry. 62(1):48-69. Abstract
Marshall GM, Liu P-Y, Gherardi S, Scarlett CJ, Bedalov A, Xu N, Iraci N, Valli E, Ling D, Thomas W et al..  2011.  SIRT1 promotes N-Myc oncogenesis through a positive feedback loop involving the effects of MKP3 and ERK on N-Myc protein stability.. PLoS genetics. 7(6):e1002135. Abstract
Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM et al..  2014.  Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach.. Molecular & cellular proteomics : MCP. Abstract
Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, Maclean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ et al..  2016.  Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.. Methods in molecular biology (Clifton, N.J.). 1410:223-36. Abstract