Center-Authored Papers

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Young Adult
Ferrari G, Korber B, Goonetilleke N, Liu MKP, Turnbull EL, Salazar-Gonzalez JF, Hawkins N, Self SG, Watson S, Betts MR et al..  2011.  Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection.. PLoS pathogens. 7(2):e1001273. Abstract
Vaccine and Infectious Disease Institute
Chattopadhyay PK, Betts MR, Price DA, Gostick E, Horton H, Roederer M, De Rosa SC.  2009.  The cytolytic enzymes granyzme A, granzyme B, and perforin: expression patterns, cell distribution, and their relationship to cell maturity and bright CD57 expression.. Journal of leukocyte biology. 85(1):88-97. Abstract
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Li J, Beckett L et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part II: Panel performance across different instrument platforms.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):411-20. Abstract
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Oxford C, Evans TG et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part I: Panel design by an empiric approach.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):400-10. Abstract
Vaccine and Infectious Disease Division
Quinn KM, Da Costa A, Yamamoto A, Berry D, Lindsay RWB, Darrah PA, Wang LS, Cheng C, Kong W-P, Gall JGD et al..  2013.  Comparative Analysis of the Magnitude, Quality, Phenotype, and Protective Capacity of Simian Immunodeficiency Virus Gag-Specific CD8+ T Cells following Human-, Simian-, and Chimpanzee-Derived Recombinant Adenoviral Vector Immunization.. Journal of immunology (Baltimore, Md. : 1950). 190(6):2720-35. Abstract
Finak G, McDavid A, Chattopadhyay P, Dominguez M, De Rosa S, Roederer M, Gottardo R.  2013.  Mixture models for single-cell assays with applications to vaccine studies.. Biostatistics (Oxford, England). Abstract
Pollara J, Hart L, Brewer F, Pickeral J, Packard BZ, Hoxie JA, Komoriya A, Ochsenbauer C, Kappes JC, Roederer M et al..  2011.  High-throughput quantitative analysis of HIV-1 and SIV-specific ADCC-mediating antibody responses.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 79(8):603-12. Abstract
Ferrari G, Korber B, Goonetilleke N, Liu MKP, Turnbull EL, Salazar-Gonzalez JF, Hawkins N, Self SG, Watson S, Betts MR et al..  2011.  Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection.. PLoS pathogens. 7(2):e1001273. Abstract
Sambor A, Garcia A, Berrong M, Pickeral J, Brown S, Rountree W, Sanchez A, Pollara J, Frahm N, Keinonen S et al..  2014.  Establishment and maintenance of a PBMC repository for functional cellular studies in support of clinical vaccine trials.. Journal of immunological methods. Abstract
Cheng C, Gall JGD, Nason M, King RC, Koup RA, Roederer M, McElrath MJ, Morgan CA, Churchyard G, Baden LR et al..  2010.  Differential specificity and immunogenicity of adenovirus type 5 neutralizing antibodies elicited by natural infection or immunization.. Journal of virology. 84(1):630-8. Abstract
Casazza JP, Bowman KA, Adzaku S, Smith EC, Enama ME, Bailer RT, Price DA, Gostick E, Gordon IJ, Ambrozak DR et al..  2013.  Therapeutic Vaccination Expands and Improves the Function of the HIV-Specific Memory T-Cell Repertoire.. The Journal of infectious diseases. Abstract
Donaldson MM, Kao S-F, Eslamizar L, Gee C, Koopman G, Lifton M, Schmitz JE, Sylwester AW, Wilson A, Hawkins N et al..  2012.  Optimization and qualification of an 8-color intracellular cytokine staining assay for quantifying T cell responses in rhesus macaques for pre-clinical vaccine studies.. Journal of immunological methods. 386(1-2):10-21. Abstract
Dominguez MH, Chattopadhyay PK, Ma S, Lamoreaux L, McDavid A, Finak G, Gottardo R, Koup RA, Roederer M.  2013.  Highly multiplexed quantitation of gene expression on single cells.. Journal of immunological methods. 391(1-2):133-45. Abstract
T-Lymphocytes
Chattopadhyay PK, Betts MR, Price DA, Gostick E, Horton H, Roederer M, De Rosa SC.  2009.  The cytolytic enzymes granyzme A, granzyme B, and perforin: expression patterns, cell distribution, and their relationship to cell maturity and bright CD57 expression.. Journal of leukocyte biology. 85(1):88-97. Abstract
T-Lymphocyte Subsets
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Oxford C, Evans TG et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part I: Panel design by an empiric approach.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):400-10. Abstract
Chattopadhyay PK, Betts MR, Price DA, Gostick E, Horton H, Roederer M, De Rosa SC.  2009.  The cytolytic enzymes granyzme A, granzyme B, and perforin: expression patterns, cell distribution, and their relationship to cell maturity and bright CD57 expression.. Journal of leukocyte biology. 85(1):88-97. Abstract
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Li J, Beckett L et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part II: Panel performance across different instrument platforms.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):411-20. Abstract
Staining and Labeling
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Li J, Beckett L et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part II: Panel performance across different instrument platforms.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):411-20. Abstract
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Oxford C, Evans TG et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part I: Panel design by an empiric approach.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):400-10. Abstract
September 2012
Donaldson MM, Kao S-F, Eslamizar L, Gee C, Koopman G, Lifton M, Schmitz JE, Sylwester AW, Wilson A, Hawkins N et al..  2012.  Optimization and qualification of an 8-color intracellular cytokine staining assay for quantifying T cell responses in rhesus macaques for pre-clinical vaccine studies.. Journal of immunological methods. 386(1-2):10-21. Abstract
Sensitivity and Specificity
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Li J, Beckett L et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part II: Panel performance across different instrument platforms.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):411-20. Abstract
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Oxford C, Evans TG et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part I: Panel design by an empiric approach.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):400-10. Abstract
Selection, Genetic
Ferrari G, Korber B, Goonetilleke N, Liu MKP, Turnbull EL, Salazar-Gonzalez JF, Hawkins N, Self SG, Watson S, Betts MR et al..  2011.  Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection.. PLoS pathogens. 7(2):e1001273. Abstract
Reproducibility of Results
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Li J, Beckett L et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part II: Panel performance across different instrument platforms.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):411-20. Abstract
McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Oxford C, Evans TG et al..  2008.  Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part I: Panel design by an empiric approach.. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 73(5):400-10. Abstract