Center-Authored Papers

Filters: Author is Carr, Steven A  [Clear All Filters]
2009
Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham A-JL, Keshishian H et al..  2009.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.. Nature biotechnology. 27(7):633-41. Abstract
Anderson LN, Anderson NG, Pearson TW, Borchers CH, Paulovich AG, Patterson SD, Gillette M, Aebersold R, Carr SA.  2009.  A human proteome detection and quantitation project.. Molecular & cellular proteomics : MCP. 8(5):883-6. Abstract
2010
Maclean B, Tomazela DM, Abbatiello SE, Zhang S, Whiteaker JR, Paulovich AG, Carr SA, MacCoss MJ.  2010.  Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry.. Analytical chemistry. 82(24):10116-24. Abstract
Paulovich AG, Billheimer D, Ham A-JL, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL et al..  2010.  Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.. Molecular & cellular proteomics : MCP. 9(2):242-54. Abstract
Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL et al..  2010.  Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.. Molecular & cellular proteomics : MCP. 9(2):225-41. Abstract
Tabb DL, Vega-Montoto L, Rudnick PA, Variyath AM, Ham A-JL, Bunk DM, Kilpatrick LE, Billheimer DD, Blackman RK, Cardasis HL et al..  2010.  Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry.. Journal of proteome research. 9(2):761-76. Abstract
2011
Zhao L, Whiteaker JR, Pope ME, Kuhn E, Jackson A, Anderson LN, Pearson TW, Carr SA, Paulovich AG.  2011.  Quantification of proteins using Peptide immunoaffinity enrichment coupled with mass spectrometry.. Journal of visualized experiments : JoVE. (53) Abstract
Whiteaker JR, Zhao L, Abbatiello SE, Burgess M, Kuhn E, Lin C, Pope ME, Razavi M, Anderson LN, Pearson TW et al..  2011.  Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry.. Molecular & cellular proteomics : MCP. 10(4):M110.005645. Abstract
2012
Kuhn E, Whiteaker JR, Mani DR, Jackson AM, Zhao L, Pope ME, Smith D, Rivera KD, Anderson LN, Skates SJ et al..  2012.  Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.. Molecular & cellular proteomics : MCP. 11(6):M111.013854. Abstract
2013
Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T et al..  2013.  Design, Implementation, and Multi-Site Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in LC-MRM-MS.. Molecular & cellular proteomics : MCP. Abstract
Ellis MJ, Gillette M, Carr SA, Paulovich AG, Smith RD, Rodland KK, Townsend RR, Kinsinger C, Mesri M, Rodriguez H et al..  2013.  Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium.. Cancer discovery. 3(10):1108-12. Abstract
2014
Mertins P, Yang F, Liu T, Mani DR, Petyuk VA, Gillette MA, Clauser KR, Qiao JW, Gritsenko MA, Moore RJ et al..  2014.  Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.. Molecular & cellular proteomics : MCP. Abstract
Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B et al..  2014.  Panorama: A Targeted Proteomics Knowledge Base.. Journal of proteome research. Abstract
Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG et al..  2014.  Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.. Nature methods. 11(2):149-55. Abstract
Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM et al..  2014.  Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach.. Molecular & cellular proteomics : MCP. Abstract
Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S et al..  2014.  Proteogenomic characterization of human colon and rectal cancer.. Nature. Abstract
2015
Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, Maclean B, Albertolle M, Allen S, Burgess M, Cusack MP et al..  2015.  Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma.. Molecular & cellular proteomics : MCP. Abstract
2016
Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, Maclean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ et al..  2016.  Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.. Methods in molecular biology (Clifton, N.J.). 1410:223-36. Abstract
Hoofnagle AN, Whiteaker JR, Carr SA, Kuhn E, Liu T, Massoni SA, Thomas SN, Townsend RR, Zimmerman LJ, Boja E et al..  2016.  Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.. Clinical chemistry. 62(1):48-69. Abstract
Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F et al..  2016.  Proteogenomics connects somatic mutations to signalling in breast cancer.. Nature. 534(7605):55-62. Abstract
Wang J, Ma Z, Carr SA, Mertins P, Zhang H, Zhang Z, Chan DW, Ellis MJC, Townsend RR, Smith RD et al..  2016.  Proteome profiling outperforms transcriptome profiling for co-expression based gene function prediction.. Molecular & cellular proteomics : MCP. Abstract