Center-Authored Papers

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Rajapakse I, Groudine M, Mesbahi M.  2012.  What can systems theory of networks offer to biology? PLoS computational biology. 8(6):e1002543.
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Kooperberg C, LeBlanc M, Dai JY, Rajapakse I.  2009.  Structures and Assumptions: Strategies to Harness Gene × Gene and Gene × Environment Interactions in GWAS.. Statistical science : a review journal of the Institute of Mathematical Statistics. 24(4):472-488. Abstract
Pitt JN, Rajapakse I, Ferré-D'Amaré AR.  2010.  SEWAL: an open-source platform for next-generation sequence analysis and visualization.. Nucleic acids research. 38(22):7908-15. Abstract
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Rajapakse I, Groudine M.  2011.  On emerging nuclear order.. The Journal of cell biology. 192(5):711-21. Abstract
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Rajapakse I, Scalzo D, Tapscott SJ, Kosak ST, Groudine M.  2010.  Networking the nucleus.. Molecular systems biology. 6:395. Abstract
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Rajapakse I, Perlman MD, Martin PJ, Hansen JA, Kooperberg C.  2012.  Multivariate detection of gene-gene interactions.. Genetic epidemiology. 36(6):622-30. Abstract
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Rajapakse I, Scalzo D, Groudine M.  2011.  Losing control: Cancer's catastrophic transition.. Nucleus (Austin, Tex.). 2(4) Abstract
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Rajapakse I, Perlman MD, Scalzo D, Kooperberg C, Groudine M, Kosak ST.  2009.  The emergence of lineage-specific chromosomal topologies from coordinate gene regulation.. Proceedings of the National Academy of Sciences of the United States of America. 106(16):6679-84. Abstract
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Rajapakse I, Groudine M, Mesbahi M.  2011.  Dynamics and control of state-dependent networks for probing genomic organization.. Proceedings of the National Academy of Sciences of the United States of America. 108(42):17257-62. Abstract