Center-Authored Papers

Filters: Author is Gafken, Philip R  [Clear All Filters]
2010
Unnikrishnan A, Gafken PR, Tsukiyama T.  2010.  Dynamic changes in histone acetylation regulate origins of DNA replication.. Nature structural & molecular biology. 17(4):430-7. Abstract
Morrish F, Noonan J, Perez-Olsen CL, Gafken PR, Fitzgibbon M, Kelleher J, Van Gilst M, Hockenbery DM.  2010.  Myc-dependent mitochondrial generation of acetyl-CoA contributes to fatty acid biosynthesis and histone acetylation during cell cycle entry.. The Journal of biological chemistry. 285(47):36267-74. Abstract
2011
Whiteaker JR, Lin C, Kennedy J, Hou L, Trute M, Sokal I, Yan P, Schoenherr RM, Zhao L, Voytovich UJ et al..  2011.  A targeted proteomics-based pipeline for verification of biomarkers in plasma.. Nature biotechnology. 29(7):625-34. Abstract
2012
Pan S, Chen R, Brand RE, Hawley S, Tamura Y, Gafken PR, Milless BP, Goodlett DR, Rush J, Brentnall TA.  2012.  Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study.. Journal of proteome research. 11(3):1937-48. Abstract
2013
Jones KA, Kim PD, Patel BB, Kelsen SG, Braverman A, Swinton DJ, Gafken PR, Jones LA, Lane WS, Neveu JM et al..  2013.  Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.. Journal of proteome research. 12(10):4351-65. Abstract
2014
Zielke RA, Gafken PR, Sikora AE.  2014.  Quantitative proteomic analysis of the cell envelopes and native membrane vesicles derived from gram-negative bacteria.. Current protocols in microbiology. 34:1F.3.1-1F.3.16. Abstract
Vogel WK, Gafken PR, Leid M, Filtz TM.  2014.  Kinetic analysis of BCL11B multisite phosphorylation-dephosphorylation and coupled sumoylation in primary thymocytes by multiple reaction monitoring mass spectroscopy.. Journal of proteome research. 13(12):5860-8. Abstract
Flood-Nichols SK, Kazanjian AA, Tinnemore D, Gafken PR, Ogata Y, Napolitano PG, Stallings JD, Ippolito DL.  2014.  Aberrant glycosylation of plasma proteins in severe preeclampsia promotes monocyte adhesion.. Reproductive sciences (Thousand Oaks, Calif.). 21(2):204-14. Abstract
Bajaj G, Hau AM, Hsu P, Gafken PR, Schimerlik MI, Ishmael JE.  2014.  Identification of an atypical calcium-dependent calmodulin binding site on the C-terminal domain of GluN2A.. Biochemical and biophysical research communications. 444(4):588-94. Abstract
Thayer NH, Leverich CK, Fitzgibbon MP, Nelson ZW, Henderson KA, Gafken PR, Hsu JJ, Gottschling DE.  2014.  Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions.. Proceedings of the National Academy of Sciences of the United States of America. 111(39):14019-26. Abstract
2015
Dancy BCR, Chen S-W, Drechsler R, Gafken PR, Olsen CP.  2015.  13C- and 15N-Labeling Strategies Combined with Mass Spectrometry Comprehensively Quantify Phospholipid Dynamics in C. elegans.. PloS one. 10(11):e0141850. Abstract
Rajkovic A, Erickson S, Witzky A, Branson OE, Seo J, Gafken PR, Frietas MA, Whitelegge JP, Faull KF, Navarre W et al..  2015.  Cyclic Rhamnosylated Elongation Factor P Establishes Antibiotic Resistance in Pseudomonas aeruginosa.. mBio. 6(3) Abstract
2016
Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA et al..  2016.  Biomarker Panel for Chronic Graft-Versus-Host Disease.. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 34(22):2583-2590. Abstract
Liu X, Yue Z, Yu J, Daguindau E, Kushekhar K, Zhang Q, Ogata Y, Gafken PR, Inamoto Y, Gracon A et al..  2016.  Proteomic characterization reveals that MMP-3 correlates with bronchiolitis obliterans syndrome following allogeneic hematopoietic cell and lung transplantation.. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 16(8):2342-51. Abstract
Zielke RA, Wierzbicki IH, Baarda BI, Gafken PR, Soge OO, Holmes KK, Jerse AE, Unemo M, Sikora AE.  2016.  Proteomics-driven antigen discovery for development of vaccines against gonorrhea.. Molecular & cellular proteomics : MCP. 15(7):2338-55. Abstract
Rajkovic A, Hummels KR, Witzky A, Erickson S, Gafken PR, Whitelegge JP, Faull KF, Kearns DB, Ibba M.  2016.  Translation control of swarming proficiency in Bacillus subtilis by 5-amino-pentanolylated elongation factor P.. The Journal of biological chemistry. 291(21):10976-85. Abstract
2017
Calses PC, Dhillon KK, Tucker N, Chi Y, Huang J-W, Kawasumi M, Nghiem P, Wang Y, Clurman BE, Jacquemont C et al..  2017.  DGCR8 Mediates Repair of UV-Induced DNA Damage Independently of RNA Processing.. Cell reports. 19(1):162-174. Abstract
Cheung RS, Castella M, Abeyta A, Gafken PR, Tucker N, Taniguchi T.  2017.  Ubiquitination-Linked Phosphorylation of the FANCI S/TQ Cluster Contributes to Activation of the Fanconi Anemia I/D2 Complex.. Cell reports. 19(12):2432-2440. Abstract
2018
Du J, Flynn R, Paz K, Ren H-G, Ogata Y, Zhang Q, Gafken PR, Storer BE, Roy NH, Burkhardt JK et al..  2018.  Murine chronic graft-versus-host disease proteome profiling discovers CCL15 as a novel biomarker in patients.. Blood. 131(15):1743-1754. Abstract
Blair KM, Mears KS, Taylor JA, Fero J, Jones LA, Gafken PR, Whitney JC, Salama NR.  2018.  The Helicobacter pylori cell shape promoting protein Csd5 interacts with the cell wall, MurF, and the bacterial cytoskeleton.. Molecular microbiology. Abstract
2019
Jagannathan S, Ogata Y, Gafken PR, Tapscott SJ, Bradley RK.  2019.  Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD.. eLife. 8 Abstract
Zhu P, Gafken PR, Mehl RA, Cooley RB.  2019.  A Highly Versatile Expression System for the Production of Multiply Phosphorylated Proteins.. ACS chemical biology. 14(7):1564-1572. Abstract