Center-Authored Papers

Filters: Author is MacCoss, Michael J  [Clear All Filters]
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Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, Maclean B, Albertolle M, Allen S, Burgess M, Cusack MP et al..  2015.  Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma.. Molecular & cellular proteomics : MCP. Abstract
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Basisty N, Dai D-F, Gagnidze A, Gitari L, Fredrickson J, Maina Y, Beyer RP, Emond MJ, Hsieh EJ, MacCoss MJ et al..  2016.  Mitochondrial-targeted catalase is good for the old mouse proteome, but not for the young: 'reverse' antagonistic pleiotropy? Aging cell. Abstract
Berger S, Procko E, Margineantu D, Lee EF, Shen BW, Zelter A, Silva D-A, Chawla K, Herold MJ, Garnier J-M et al..  2016.  Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer.. eLife. 5 Abstract
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Dai D-F, Hsieh EJ, Chen T, Menendez LG, Basisty NB, Tsai L, Beyer RP, Crispin DA, Shulman NJ, Szeto HH et al..  2013.  Global proteomics and pathway analysis of pressure-overload-induced heart failure and its attenuation by mitochondrial-targeted peptides.. Circulation. Heart failure. 6(5):1067-76. Abstract
Dai D-F, Karunadharma PP, Chiao YA, Basisty N, Crispin D, Hsieh EJ, Chen T, Gu H, Djukovic D, Raftery D et al..  2014.  Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart.. Aging cell. Abstract
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Hsieh EJ, Shulman NJ, Dai D-F, Vincow ES, Karunadharma PP, Pallanck L, Rabinovitch PS, MacCoss MJ.  2012.  Topograph, a software platform for precursor enrichment corrected global protein turnover measurements.. Molecular & cellular proteomics : MCP. Abstract
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Karunadharma PP, Basisty N, Dai D-F, Chiao YA, Quarles EK, Hsieh EJ, Crispin D, Bielas JH, Ericson NG, Beyer RP et al..  2015.  Subacute calorie restriction and rapamycin discordantly alter mouse liver proteome homeostasis and reverse aging effects.. Aging cell. Abstract
Karunadharma PP, Basisty N, Chiao YA, Dai D-F, Drake R, Levy N, Koh WJ, Emond MJ, Kruse S, Marcinek D et al..  2015.  Respiratory chain protein turnover rates in mice are highly heterogeneous but strikingly conserved across tissues, ages, and treatments.. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. Abstract
Kruse SE, Karunadharma PP, Basisty N, Johnson R, Beyer RP, MacCoss MJ, Rabinovitch PS, Marcinek DJ.  2015.  Age modifies respiratory complex I and protein homeostasis in a muscle type-specific manner.. Aging cell. Abstract
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Maclean B, Tomazela DM, Abbatiello SE, Zhang S, Whiteaker JR, Paulovich AG, Carr SA, MacCoss MJ.  2010.  Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry.. Analytical chemistry. 82(24):10116-24. Abstract
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Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
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Ranjitkar P, Press MO, Yi X, Baker R, MacCoss MJ, Biggins S.  2010.  An E3 ubiquitin ligase prevents ectopic localization of the centromeric histone H3 variant via the centromere targeting domain.. Molecular cell. 40(3):455-64. Abstract
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Schleit J, Johnson SC, Bennett CF, Simko M, Trongtham N, Castanza A, Hsieh EJ, Moller RM, Wasko BM, Delaney JR et al..  2013.  Molecular mechanisms underlying genotype-dependent responses to dietary restriction.. Aging cell. Abstract
Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B et al..  2014.  Panorama: A Targeted Proteomics Knowledge Base.. Journal of proteome research. Abstract
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Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, Maclean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ et al..  2016.  Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.. Methods in molecular biology (Clifton, N.J.). 1410:223-36. Abstract