Center-Authored Papers

Filters: Author is Paulovich, Amanda G  [Clear All Filters]
Journal Article
Schoenherr RM, Saul RG, Whiteaker JR, Yan P, Whiteley GR, Paulovich AG.  2015.  Anti-peptide monoclonal antibodies generated for immuno-multiple reaction monitoring-mass spectrometry assays have a high probability of supporting Western blot and ELISA.. Molecular & cellular proteomics : MCP. 14(2):382-98. Abstract
Ivey RG, Subramanian O, Lorentzen TD, Paulovich AG.  2009.  Antibody-based screen for ionizing radiation-dependent changes in the Mammalian proteome for use in biodosimetry.. Radiation research. 171(5):549-61. Abstract
Zhao L, Whiteaker JR, Voytovich UJ, Ivey RG, Paulovich AG.  2015.  Antibody-Coupled Magnetic Beads Can Be Reused in Immuno-MRM Assays To Reduce Cost and Extend Antibody Supply.. Journal of proteome research. Abstract
Marcon E, Jain H, Bhattacharya A, Guo H, Phanse S, Pu S, Byram G, Collins BC, Dowdell E, Fenner M et al..  2015.  Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.. Nature methods. Abstract
Whiteaker JR, Zhao L, Anderson L, Paulovich AG.  2010.  An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers.. Molecular & cellular proteomics : MCP. 9(1):184-96. Abstract
Schoenherr RM, Zhao L, Whiteaker JR, Feng L-C, Li L, Liu L, Liu X, Paulovich AG.  2010.  Automated screening of monoclonal antibodies for SISCAPA assays using a magnetic bead processor and liquid chromatography-selected reaction monitoring-mass spectrometry.. Journal of immunological methods. 353(1-2):49-61. Abstract
Ivey RG, Moore HD, Voytovich UJ, Thienes CP, Lorentzen TD, Pogosova-Agadjanyan EL, Frayo S, Izaguirre VK, Lundberg SJ, Hedin L et al..  2011.  Blood-based detection of radiation exposure in humans based on novel phospho-Smc1 ELISA.. Radiation research. 175(3):266-81. Abstract
Schoenherr RM, Zhao L, Ivey RG, Voytovich UJ, Kennedy J, Yan P, Lin C, Whiteaker JR, Paulovich AG.  2016.  Commercially available antibodies can be applied in quantitative multiplexed peptide immunoaffinity enrichment targeted mass spectrometry assays.. Proteomics. Abstract
Ellis MJ, Gillette M, Carr SA, Paulovich AG, Smith RD, Rodland KK, Townsend RR, Kinsinger C, Mesri M, Rodriguez H et al..  2013.  Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium.. Cancer discovery. 3(10):1108-12. Abstract
Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, Maclean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ et al..  2014.  CPTAC Assay Portal: a repository of targeted proteomic assays.. Nature methods. 11(7):703-4.
Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG et al..  2014.  Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.. Nature methods. 11(2):149-55. Abstract
Huang D, Piening BD, Kennedy JJ, Lin C, Jones-Weinert CW, Yan P, Paulovich AG.  2016.  DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae.. Genetics. 203(1):353-368. Abstract
Maclean B, Tomazela DM, Abbatiello SE, Zhang S, Whiteaker JR, Paulovich AG, Carr SA, MacCoss MJ.  2010.  Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry.. Analytical chemistry. 82(24):10116-24. Abstract
Whiteaker JR, Zhao L, Abbatiello SE, Burgess M, Kuhn E, Lin C, Pope ME, Razavi M, Anderson LN, Pearson TW et al..  2011.  Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometry.. Molecular & cellular proteomics : MCP. 10(4):M110.005645. Abstract
Wang P, Whiteaker JR, Paulovich AG.  2009.  The evolving role of mass spectrometry in cancer biomarker discovery.. Cancer biology & therapy. 8(12):1083-94. Abstract
Whiteaker JR, Zhao L, Frisch C, Ylera F, Harth S, Knappik A, Paulovich AG.  2014.  High-Affinity Recombinant Antibody Fragments (Fabs) Can Be Applied in Peptide Enrichment Immuno-MRM Assays.. Journal of proteome research. 13(4):2187-2196. Abstract
Anderson LN, Anderson NG, Pearson TW, Borchers CH, Paulovich AG, Patterson SD, Gillette M, Aebersold R, Carr SA.  2009.  A human proteome detection and quantitation project.. Molecular & cellular proteomics : MCP. 8(5):883-6. Abstract
Moore HD, Ivey RG, Voytovich UJ, Lin C, Stirewalt DL, Pogosova-Agadjanyan EL, Paulovich AG.  2014.  The Human Salivary Proteome is Radiation Responsive.. Radiation research. 181(5):521-30. Abstract
Kennedy JJ, Yan P, Zhao L, Ivey RG, Voytovich UJ, Moore HD, Lin C, Pogosova-Agadjanyan EL, Stirewalt DL, Reding KW et al..  2015.  Immobilized metal affinity chromatography coupled to multiple reaction monitoring enables reproducible quantification of phospho-signaling.. Molecular & cellular proteomics : MCP. Abstract
Kuhn E, Whiteaker JR, Mani DR, Jackson AM, Zhao L, Pope ME, Smith D, Rivera KD, Anderson LN, Skates SJ et al..  2012.  Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.. Molecular & cellular proteomics : MCP. 11(6):M111.013854. Abstract
Paulovich AG, Billheimer D, Ham A-JL, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL et al..  2010.  Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.. Molecular & cellular proteomics : MCP. 9(2):242-54. Abstract
Mertins P, Yang F, Liu T, Mani DR, Petyuk VA, Gillette MA, Clauser KR, Qiao JW, Gritsenko MA, Moore RJ et al..  2014.  Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.. Molecular & cellular proteomics : MCP. Abstract
Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, Maclean B, Albertolle M, Allen S, Burgess M, Cusack MP et al..  2015.  Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma.. Molecular & cellular proteomics : MCP. Abstract
Furuya M, Kirschbaum SB, Paulovich AG, Pauli BU, Zhang H, Alexander JS, Farr AG, Ruddell A.  2010.  Lymphatic endothelial murine chloride channel calcium-activated 1 is a ligand for leukocyte LFA-1 and Mac-1.. Journal of immunology (Baltimore, Md. : 1950). 185(10):5769-77. Abstract
Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham A-JL, Keshishian H et al..  2009.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.. Nature biotechnology. 27(7):633-41. Abstract