Center-Authored Papers

Filters: Author is Paulovich, Amanda G  [Clear All Filters]
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Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, Maclean B, Albertolle M, Allen S, Burgess M, Cusack MP et al..  2015.  Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma.. Molecular & cellular proteomics : MCP. Abstract
Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham A-JL, Keshishian H et al..  2009.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.. Nature biotechnology. 27(7):633-41. Abstract
Anderson LN, Anderson NG, Pearson TW, Borchers CH, Paulovich AG, Patterson SD, Gillette M, Aebersold R, Carr SA.  2009.  A human proteome detection and quantitation project.. Molecular & cellular proteomics : MCP. 8(5):883-6. Abstract
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Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM et al..  2014.  Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach.. Molecular & cellular proteomics : MCP. Abstract
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Ellis MJ, Gillette M, Carr SA, Paulovich AG, Smith RD, Rodland KK, Townsend RR, Kinsinger C, Mesri M, Rodriguez H et al..  2013.  Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium.. Cancer discovery. 3(10):1108-12. Abstract
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Furuya M, Kirschbaum SB, Paulovich AG, Pauli BU, Zhang H, Alexander JS, Farr AG, Ruddell A.  2010.  Lymphatic endothelial murine chloride channel calcium-activated 1 is a ligand for leukocyte LFA-1 and Mac-1.. Journal of immunology (Baltimore, Md. : 1950). 185(10):5769-77. Abstract
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Hoofnagle AN, Whiteaker JR, Carr SA, Kuhn E, Liu T, Massoni SA, Thomas SN, Townsend RR, Zimmerman LJ, Boja E et al..  2016.  Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.. Clinical chemistry. 62(1):48-69. Abstract
Huang D, Piening BD, Kennedy JJ, Lin C, Jones-Weinert CW, Yan P, Paulovich AG.  2016.  DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae.. Genetics. 203(1):353-368. Abstract
Huang D, Piening BD, Paulovich AG.  2013.  The preference for error-free or error-prone postreplication repair in Saccharomyces cerevisiae exposed to low-dose methyl methanesulfonate is cell cycle dependent.. Molecular and cellular biology. 33(8):1515-27. Abstract
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Ivey RG, Moore HD, Voytovich UJ, Thienes CP, Lorentzen TD, Pogosova-Agadjanyan EL, Frayo S, Izaguirre VK, Lundberg SJ, Hedin L et al..  2011.  Blood-based detection of radiation exposure in humans based on novel phospho-Smc1 ELISA.. Radiation research. 175(3):266-81. Abstract
Ivey RG, Subramanian O, Lorentzen TD, Paulovich AG.  2009.  Antibody-based screen for ionizing radiation-dependent changes in the Mammalian proteome for use in biodosimetry.. Radiation research. 171(5):549-61. Abstract
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Jung S, Whiteaker JR, Zhao L, Yoo H-W, Paulovich AG, Hahn SH.  2016.  Quantification of ATP7B Protein in Dried Blood Spots by Peptide Immuno-SRM as a Potential Screen for Wilson's Disease.. Journal of proteome research. Abstract
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Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG et al..  2014.  Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.. Nature methods. 11(2):149-55. Abstract
Kennedy JJ, Whiteaker JR, Schoenherr RM, Yan P, Allison K, Shipley M, Lerch M, Hoofnagle AN, Baird GS, Paulovich AG.  2016.  Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues.. Journal of proteome research. 15(8):2717-2728. Abstract
Kennedy JJ, Yan P, Zhao L, Ivey RG, Voytovich UJ, Moore HD, Lin C, Pogosova-Agadjanyan EL, Stirewalt DL, Reding KW et al..  2015.  Immobilized metal affinity chromatography coupled to multiple reaction monitoring enables reproducible quantification of phospho-signaling.. Molecular & cellular proteomics : MCP. Abstract
Kuhn E, Whiteaker JR, Mani DR, Jackson AM, Zhao L, Pope ME, Smith D, Rivera KD, Anderson LN, Skates SJ et al..  2012.  Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.. Molecular & cellular proteomics : MCP. 11(6):M111.013854. Abstract
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Maclean B, Tomazela DM, Abbatiello SE, Zhang S, Whiteaker JR, Paulovich AG, Carr SA, MacCoss MJ.  2010.  Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry.. Analytical chemistry. 82(24):10116-24. Abstract
Marcon E, Jain H, Bhattacharya A, Guo H, Phanse S, Pu S, Byram G, Collins BC, Dowdell E, Fenner M et al..  2015.  Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.. Nature methods. Abstract
Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F et al..  2016.  Proteogenomics connects somatic mutations to signalling in breast cancer.. Nature. 534(7605):55-62. Abstract
Mertins P, Yang F, Liu T, Mani DR, Petyuk VA, Gillette MA, Clauser KR, Qiao JW, Gritsenko MA, Moore RJ et al..  2014.  Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.. Molecular & cellular proteomics : MCP. Abstract
Moore HD, Ivey RG, Voytovich UJ, Lin C, Stirewalt DL, Pogosova-Agadjanyan EL, Paulovich AG.  2014.  The Human Salivary Proteome is Radiation Responsive.. Radiation research. 181(5):521-30. Abstract
Murakami-Sekimata A, Huang D, Piening BD, Bangur C, Paulovich AG.  2010.  The Saccharomyces cerevisiae RAD9, RAD17 and RAD24 genes are required for suppression of mutagenic post-replicative repair during chronic DNA damage.. DNA repair. 9(7):824-34. Abstract
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Paulovich AG, Billheimer D, Ham A-JL, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL et al..  2010.  Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.. Molecular & cellular proteomics : MCP. 9(2):242-54. Abstract
Paulovich AG, Whiteaker JR.  2016.  Quantifying the human proteome.. Nature biotechnology. 34(10):1033-1034.
Piening BD, Huang D, Paulovich AG.  2013.  Novel connections between DNA replication, telomere homeostasis, and the DNA damage response revealed by a genome-wide screen for TEL1/ATM interactions in Saccharomyces cerevisiae.. Genetics. 193(4):1117-33. Abstract