Center-Authored Papers

Filters: Author is Salipante, Stephen J  [Clear All Filters]
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Roach DJ, Burton JN, Lee C, Stackhouse B, Butler-Wu SM, Cookson BT, Shendure J, Salipante SJ.  2015.  A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota.. PLoS genetics. 11(7):e1005413. Abstract
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Sengupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ.  2014.  Whole Genome Sequencing for High-Resolution Investigation of Methicillin Resistant Staphylococcus aureus Epidemiology and Genome Plasticity.. Journal of clinical microbiology. Abstract
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Pritchard CC, Salipante SJ, Koehler K, Smith C, Scroggins S, Wood B, Wu D, Lee MK, Dintzis S, Adey A et al..  2014.  Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer specimens.. The Journal of molecular diagnostics : JMD. 16(1):56-67. Abstract
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Salipante SJ, Adey A, Thomas A, Lee C, Liu YJ, Kumar A, Lewis AP, Wu D, Fromm JR, Shendure J.  2015.  Recurrent somatic loss of TNFRSF14 in classical Hodgkin lymphoma.. Genes, chromosomes & cancer. Abstract
Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT et al..  2013.  Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections.. PloS one. 8(5):e65226. Abstract
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Salipante SJ, Roach DJ, Kitzman JO, Snyder MW, Stackhouse B, Butler-Wu SM, Lee C, Cookson BT, Shendure J.  2015.  Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains.. Genome research. 25(1):119-28. Abstract
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Konnick EQ, Chow S-K, Reder NP, Sengupta DJ, Hoogestraat DR, Pottinger PS, Abbott AN, Monsaas PW, Kurosawa K, Stephens K et al..  2016.  Incidental identification of Strongyloides stercoralis infection by broad-range 28S rDNA gene sequencing in a patient with a hematolymphoid malignancy.. Diagnostic microbiology and infectious disease. 86(4):362-364. Abstract
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Cohen SA, Turner EH, Beightol MB, Jacobson A, Gooley TA, Salipante SJ, Haraldsdottir S, Smith C, Scroggins S, Tait JF et al..  2016.  Frequent PIK3CA Mutations in Colorectal and Endometrial Tumors with 2 or More Somatic Mutations in Mismatch Repair Genes.. Gastroenterology. Abstract
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Kumar A, White TA, MacKenzie AP, Clegg N, Lee C, Dumpit RF, Coleman I, Ng SB, Salipante SJ, Rieder MJ et al..  2011.  Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers.. Proceedings of the National Academy of Sciences of the United States of America. 108(41):17087-92. Abstract
Liu GW, Livesay BR, Kacherovsky NA, Cieslewicz M, Lutz E, Waalkes A, Jensen MC, Salipante SJ, Pun SH.  2015.  Efficient Identification of Murine M2 Macrophage Peptide Targeting Ligands by Phage Display and Next-Generation Sequencing.. Bioconjugate chemistry. Abstract
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Salipante SJ, Fromm JR, Shendure J, Wood BL, Wu D.  2014.  Detection of minimal residual disease in NPM1-mutated acute myeloid leukemia by next-generation sequencing.. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. Abstract
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Salk JJ, Salipante SJ, Risques RA, Crispin DA, Li L, Bronner MP, Brentnall TA, Rabinovitch PS, Horwitz MS, Loeb LA.  2009.  Clonal expansions in ulcerative colitis identify patients with neoplasia.. Proceedings of the National Academy of Sciences of the United States of America. 106(49):20871-6. Abstract
Salipante SJ, Kalapila A, Pottinger PS, Hoogestraat DR, Cummings L, Duchin JS, Sengupta DJ, Pergam SA, Cookson BT, Butler-Wu SM.  2015.  Characterization of a multidrug-resistant, novel Bacteroides genomospecies.. Emerging infectious diseases. 21(1):95-8. Abstract