Center-Authored Papers

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Dean J, Emerson RO, Vignali M, Sherwood AM, Rieder MJ, Carlson CS, Robins HS.  2015.  Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci.. Genome medicine. 7(1):123. Abstract
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Subudhi SK, Aparicio A, Gao J, Zurita AJ, Araujo JC, Logothetis CJ, Tahir SA, Korivi BR, Slack RS, Vence L et al..  2016.  Clonal expansion of CD8 T cells in the systemic circulation precedes development of ipilimumab-induced toxicities.. Proceedings of the National Academy of Sciences of the United States of America. 113(42):11919-11924. Abstract
Gaide O, Emerson RO, Jiang X, Gulati N, Nizza S, Desmarais C, Robins H, Krueger JG, Clark RA, Kupper TS.  2015.  Common clonal origin of central and resident memory T cells following skin immunization.. Nature medicine. Abstract
Robert L, Tsoi J, Wang X, Emerson RO, Homet B, Chodon T, Mok S, Huang R-R, Cochran AJ, Comin-Anduix B et al..  2014.  CTLA4 blockade broadens the peripheral T cell receptor repertoire.. Clinical cancer research : an official journal of the American Association for Cancer Research. Abstract
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Emerson RO, Mathew JM, Konieczna IM, Robins HS, Leventhal JR.  2014.  Defining the alloreactive T cell repertoire using high-throughput sequencing of mixed lymphocyte reaction culture.. PloS one. 9(11):e111943. Abstract
Wu D, Emerson RO, Sherwood AM, Loh ML, Angiolillo A, Howie B, Vogt J, Rieder MJ, Kirsch I, Carlson CS et al..  2014.  Detection of minimal residual disease in patients with B lymphoblastic leukemia by high-throughput sequencing of IGH.. Clinical cancer research : an official journal of the American Association for Cancer Research. Abstract
Faham M, Carlton V, Moorhead M, Zheng J, Klinger M, Pepin F, Asbury T, Vignali M, Emerson RO, Robins HS et al..  2016.  Discovery of T-Cell Receptor Beta Motifs Specific to HLA-B27(+) Ankylosing Spondylitis by Deep Repertoire Sequence Analysis.. Arthritis & rheumatology (Hoboken, N.J.). Abstract
DeWitt WS, Emerson RO, Lindau P, Vignali M, Snyder TM, Desmarais C, Sanders C, Utsugi H, Warren EH, McElrath J et al..  2015.  Dynamics of the cytotoxic T cell response to a model of acute viral infection.. Journal of virology. 89(8):4517-26. Abstract
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Howie B, Sherwood AM, Berkebile AD, Berka J, Emerson RO, Williamson DW, Kirsch I, Vignali M, Rieder MJ, Carlson CS et al..  2015.  High-throughput pairing of T cell receptor α and β sequences.. Science translational medicine. 7(301):301ra131. Abstract
Emerson RO, Sherwood AM, Rieder MJ, Guenthoer J, Williamson DW, Carlson CS, Drescher CW, Tewari M, Bielas JH, Robins HS.  2013.  High-throughput sequencing of T cell receptors reveals a homogeneous repertoire of tumor-infiltrating lymphocytes in ovarian cancer.. The Journal of pathology. Abstract
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Emerson RO, DeWitt WS, Vignali M, Gravley J, Hu JK, Osborne EJ, Desmarais C, Klinger M, Carlson CS, Hansen JA et al..  2017.  Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire.. Nature genetics. Abstract
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Tumeh PC, Harview CL, Yearley JH, Shintaku PI, Taylor EJM, Robert L, Chmielowski B, Spasic M, Henry G, Ciobanu V et al..  2014.  PD-1 blockade induces responses by inhibiting adaptive immune resistance.. Nature. 515(7528):568-71. Abstract
DeWitt WS, Lindau P, Snyder TM, Sherwood AM, Vignali M, Carlson CS, Greenberg PD, Duerkopp N, Emerson RO, Robins HS.  2016.  A Public Database of Memory and Naive B-Cell Receptor Sequences.. PloS one. 11(8):e0160853. Abstract
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Seay HR, Yusko E, Rothweiler SJ, Zhang L, Posgai AL, Campbell-Thompson M, Vignali M, Emerson RO, Kaddis JS, Ko D et al..  2016.  Tissue distribution and clonal diversity of the T and B cell repertoire in type 1 diabetes.. JCI insight. 1(20):e88242. Abstract
Sherwood AM, Emerson RO, Scherer D, Habermann N, Buck K, Staffa J, Desmarais C, Halama N, Jaeger D, Schirmacher P et al..  2013.  Tumor-infiltrating lymphocytes in colorectal tumors display a diversity of T cell receptor sequences that differ from the T cells in adjacent mucosal tissue.. Cancer immunology, immunotherapy : CII. 62(9):1453-1461. Abstract
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Carlson CS, Emerson RO, Sherwood AM, Desmarais C, Chung M-W, Parsons JM, Steen MS, LaMadrid-Herrmannsfeldt MA, Williamson DW, Livingston RJ et al..  2013.  Using synthetic templates to design an unbiased multiplex PCR assay.. Nature communications. 4:2680. Abstract