Center-Authored Papers

Filters: Author is Tsukiyama, Toshio  [Clear All Filters]
Journal Article
Au TJ, Rodriguez J, Vincent JA, Tsukiyama T.  2011.  ATP-dependent chromatin remodeling factors tune S phase checkpoint activity.. Molecular and cellular biology. 31(22):4454-63. Abstract
Vincent JA, Kwong TJ, Tsukiyama T.  2008.  ATP-dependent chromatin remodeling shapes the DNA replication landscape.. Nature structural & molecular biology. 15(5):477-84. Abstract
Alcid EA, Tsukiyama T.  2014.  ATP-dependent chromatin remodeling shapes the long noncoding RNA landscape.. Genes & development. 28(21):2348-60. Abstract
Rodriguez J, Tsukiyama T.  2013.  ATR-like kinase Mec1 facilitates both chromatin accessibility at DNA replication forks and replication fork progression during replication stress.. Genes & development. 27(1):74-86. Abstract
Yadon AN, Van de Mark D, Basom R, Delrow JJ, Whitehouse I, Tsukiyama T.  2010.  Chromatin remodeling around nucleosome-free regions leads to repression of noncoding RNA transcription.. Molecular and cellular biology. 30(21):5110-22. Abstract
Lee L, Rodriguez J, Tsukiyama T.  2015.  Chromatin remodeling factors isw2 and ino80 regulate checkpoint activity and chromatin structure in s phase.. Genetics. 199(4):1077-91. Abstract
Swygert SG, Kim S, Wu X, Fu T, Hsieh T-H, Rando OJ, Eisenman RN, Shendure J, McKnight JN, Tsukiyama T.  2018.  Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence.. Molecular cell. Abstract
McKnight JN, Tsukiyama T.  2015.  The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae.. Genomics data. 6:245-8. Abstract
Yadon AN, Singh BN, Hampsey M, Tsukiyama T.  2013.  DNA looping facilitates targeting of a chromatin remodeling enzyme.. Molecular cell. 50(1):93-103. Abstract
Yadon AN, Tsukiyama T.  2013.  DNA looping-dependent targeting of a chromatin remodeling factor.. Cell cycle (Georgetown, Tex.). 12(12):1809-10.
Unnikrishnan A, Gafken PR, Tsukiyama T.  2010.  Dynamic changes in histone acetylation regulate origins of DNA replication.. Nature structural & molecular biology. 17(4):430-7. Abstract
Unnikrishnan A, Akiyoshi B, Biggins S, Tsukiyama T.  2012.  An efficient purification system for native minichromosome from Saccharomyces cerevisiae.. Methods in molecular biology (Clifton, N.J.). 833:115-23. Abstract
Alcid EA, Tsukiyama T.  2016.  Expansion of antisense lncRNA transcriptomes in budding yeast species since the loss of RNAi.. Nature structural & molecular biology. 23(5):450-455. Abstract
Rodriguez J, McKnight JN, Tsukiyama T.  2014.  Genome-Wide Analysis of Nucleosome Positions, Occupancy, and Accessibility in Yeast: Nucleosome Mapping, High-Resolution Histone ChIP, and NCAM.. Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]. 108:21.28.1-21.28.16. Abstract
McKnight JN, Boerma JW, Breeden LL, Tsukiyama T.  2015.  Global Promoter Targeting of a Conserved Lysine Deacetylase for Transcriptional Shutoff during Quiescence Entry.. Molecular cell. 59(5):732-43. Abstract
Bogenschutz NL, Rodriguez J, Tsukiyama T.  2014.  Initiation of DNA replication from non-canonical sites on an origin-depleted chromosome.. PloS one. 9(12):e114545. Abstract
Zentner GE, Tsukiyama T, Henikoff S.  2013.  ISWI and CHD Chromatin Remodelers Bind Promoters but Act in Gene Bodies.. PLoS genetics. 9(2):e1003317. Abstract
McKnight JN, Breeden LL, Tsukiyama T.  2015.  A Molecular Off Switch for Transcriptional Quiescence.. Cell cycle (Georgetown, Tex.). 14(23):3667-8.
Rodriguez J, Lee L, Lynch B, Tsukiyama T.  2016.  Nucleosome occupancy as a novel chromatin parameter for replication origin functions.. Genome research. Abstract
Whitehouse I, Tsukiyama T.  2009.  Opening windows to the genome.. Cell. 137(3):400-2. Abstract
McKnight JN, Tsukiyama T, Bowman GD.  2016.  Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler.. Genome research. Abstract
Yadon AN, Tsukiyama T.  2011.  SnapShot: Chromatin remodeling: ISWI.. Cell. 144(3):453-453.e1.
Alcid EA, Tsukiyama T.  2016.  Systematic approaches to identify functional lncRNAs.. Current opinion in genetics & development. 37:46-50. Abstract