Center-Authored Papers

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transcriptome
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
TRANSCRIPTION FACTORS
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Species Specificity
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Shared Resources
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
September 2012
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
RNA
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Regulatory Sequences, Nucleic Acid
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Molecular Sequence Annotation
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
MICE
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Humans
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
GENOMICS
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Genome-Wide Association Study
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
GENOME
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Gene Regulatory Networks
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Gene Expression Regulation
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Flow Cytometry Core Facility
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
DNA Replication
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Deoxyribonuclease I
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Conserved Sequence
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Comparative Medicine Core Facility
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
chromatin
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Center-Authored Paper
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
Cell Lineage
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract
Basic Sciences Division
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
Animals
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD et al..  2014.  A comparative encyclopedia of DNA elements in the mouse genome.. Nature. 515(7527):355-64. Abstract