Center-Authored Papers

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Transcription, Genetic
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al..  2012.  The accessible chromatin landscape of the human genome.. Nature. 489(7414):75-82. Abstract
Transcription Initiation Site
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al..  2012.  The accessible chromatin landscape of the human genome.. Nature. 489(7414):75-82. Abstract
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
TRANSCRIPTION FACTORS
Stergachis AB, Neph S, Sandstrom R, Haugen E, Reynolds AP, Zhang M, Byron R, Canfield T, Stelhing-Sun S, Lee K et al..  2014.  Conservation of trans-acting circuitry during mammalian regulatory evolution.. Nature. 515(7527):365-70. Abstract
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J et al..  2012.  Systematic localization of common disease-associated variation in regulatory DNA.. Science (New York, N.Y.). 337(6099):1190-5. Abstract
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al..  2012.  The accessible chromatin landscape of the human genome.. Nature. 489(7414):75-82. Abstract
Vierstra J, Rynes E, Sandstrom R, Zhang M, Canfield T, Hansen SR, Stehling-Sun S, Sabo PJ, Byron R, Humbert R et al..  2014.  Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.. Science (New York, N.Y.). 346(6212):1007-12. Abstract
Shared Resources
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J et al..  2012.  Systematic localization of common disease-associated variation in regulatory DNA.. Science (New York, N.Y.). 337(6099):1190-5. Abstract
September 2013
Tseng H-HE, Hullar MAJ, Li F, Lampe JW, Sandstrom R, Johnson AK, Strate LL, Ruzzo WL, Stamatoyannopoulos J.  2013.  A microbial profiling method for the human microbiota using high-throughput sequencing.. Metagenomics (Cairo, Egypt). 2:235646. Abstract
September 2012
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al..  2012.  The accessible chromatin landscape of the human genome.. Nature. 489(7414):75-82. Abstract
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J et al..  2012.  Systematic localization of common disease-associated variation in regulatory DNA.. Science (New York, N.Y.). 337(6099):1190-5. Abstract
Restriction Mapping
Vierstra J, Rynes E, Sandstrom R, Zhang M, Canfield T, Hansen SR, Stehling-Sun S, Sabo PJ, Byron R, Humbert R et al..  2014.  Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.. Science (New York, N.Y.). 346(6212):1007-12. Abstract
Regulatory Sequences, Nucleic Acid
Stergachis AB, Neph S, Sandstrom R, Haugen E, Reynolds AP, Zhang M, Byron R, Canfield T, Stelhing-Sun S, Lee K et al..  2014.  Conservation of trans-acting circuitry during mammalian regulatory evolution.. Nature. 515(7527):365-70. Abstract
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al..  2012.  The accessible chromatin landscape of the human genome.. Nature. 489(7414):75-82. Abstract
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J et al..  2012.  Systematic localization of common disease-associated variation in regulatory DNA.. Science (New York, N.Y.). 337(6099):1190-5. Abstract
Vierstra J, Rynes E, Sandstrom R, Zhang M, Canfield T, Hansen SR, Stehling-Sun S, Sabo PJ, Byron R, Humbert R et al..  2014.  Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.. Science (New York, N.Y.). 346(6212):1007-12. Abstract
Regulatory Elements, Transcriptional
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J et al..  2012.  Systematic localization of common disease-associated variation in regulatory DNA.. Science (New York, N.Y.). 337(6099):1190-5. Abstract
Public Health Sciences Division
Tseng H-HE, Hullar MAJ, Li F, Lampe JW, Sandstrom R, Johnson AK, Strate LL, Ruzzo WL, Stamatoyannopoulos J.  2013.  A microbial profiling method for the human microbiota using high-throughput sequencing.. Metagenomics (Cairo, Egypt). 2:235646. Abstract
Promoter Regions, Genetic
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J et al..  2012.  Systematic localization of common disease-associated variation in regulatory DNA.. Science (New York, N.Y.). 337(6099):1190-5. Abstract
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B et al..  2012.  The accessible chromatin landscape of the human genome.. Nature. 489(7414):75-82. Abstract
Polymorphism, Single Nucleotide
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J et al..  2012.  Systematic localization of common disease-associated variation in regulatory DNA.. Science (New York, N.Y.). 337(6099):1190-5. Abstract