Center-Authored Papers

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Galipeau PC, Oman KM, Paulson TG, Sanchez CA, Zhang Q, Marty JA, Delrow JJ, Kuhner MK, Vaughan TL, Reid BJ et al..  2018.  NSAID use and somatic exomic mutations in Barrett's esophagus.. Genome medicine. 10(1):17. Abstract
Gall A, Fero J, McCoy C, Claywell BC, Sanchez CA, Blount PL, Li X, Vaughan TL, Matsen FA, Reid BJ et al..  2015.  Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett's Esophagus Cohort.. PloS one. 10(6):e0129055. Abstract
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Kissel HD, Paulson TG, Liu K, Li X, Swisher E, Garcia R, Sanchez CA, Reid BJ, Reed SD, Doherty JA.  2013.  Feasibility of RNA and DNA extraction from fresh pipelle and archival endometrial tissues for use in gene expression and SNP arrays.. Obstetrics and gynecology international. 2013:576842. Abstract
Kissel HD, Galipeau PC, Li X, Reid BJ.  2009.  Translation of an STR-based biomarker into a clinically compatible SNP-based platform for loss of heterozygosity.. Cancer biomarkers : section A of Disease markers. 5(3):143-58. Abstract
Kostadinov RL, Kuhner MK, Li X, Sanchez CA, Galipeau PC, Paulson TG, Sather CL, Srivastava A, Odze RD, Blount PL et al..  2013.  NSAIDs Modulate Clonal Evolution in Barrett's Esophagus.. PLoS genetics. 9(6):e1003553. Abstract
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Li X, Galipeau PC, Sanchez CA, Blount PL, Maley CC, Arnaudo J, Peiffer DA, Pokholok D, Gunderson KL, Reid BJ.  2008.  Single nucleotide polymorphism-based genome-wide chromosome copy change, loss of heterozygosity, and aneuploidy in Barrett's esophagus neoplastic progression.. Cancer prevention research (Philadelphia, Pa.). 1(6):413-23. Abstract
Li X, Paulson TG, Galipeau PC, Sanchez CA, Liu K, Kuhner MK, Maley CC, Self SG, Vaughan TL, Reid BJ et al..  2015.  Assessment of esophageal adenocarcinoma risk using somatic chromosome alterations in longitudinal samples in Barrett's esophagus.. Cancer prevention research (Philadelphia, Pa.). 8(9):845-856. Abstract
Li X, Galipeau PC, Paulson TG, Sanchez CA, Arnaudo J, Liu K, Sather CL, Kostadinov RL, Odze RD, Kuhner MK et al..  2014.  Temporal and Spatial Evolution of Somatic Chromosomal Alterations: A Case-Cohort Study of Barrett's Esophagus.. Cancer prevention research (Philadelphia, Pa.). 7(1):114-27. Abstract
Li X, Blount PL, Vaughan TL, Reid BJ.  2011.  Application of biomarkers in cancer risk management: evaluation from stochastic clonal evolutionary and dynamic system optimization points of view.. PLoS computational biology. 7(2):e1001087. Abstract
Li X, Blount PL, Reid BJ, Vaughan TL.  2014.  Quantification of population benefit in evaluation of biomarkers: practical implications for disease detection and prevention.. BMC medical informatics and decision making. 14(1):15. Abstract
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Merlo LMF, Shah NA, Li X, Blount PL, Vaughan TL, Reid BJ, Maley CC.  2010.  A comprehensive survey of clonal diversity measures in Barrett's esophagus as biomarkers of progression to esophageal adenocarcinoma.. Cancer prevention research (Philadelphia, Pa.). 3(11):1388-97. Abstract
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Paulson TG, Maley CC, Li X, Li H, Sanchez CA, Chao DL, Odze RD, Vaughan TL, Blount PL, Reid BJ.  2009.  Chromosomal instability and copy number alterations in Barrett's esophagus and esophageal adenocarcinoma.. Clinical cancer research : an official journal of the American Association for Cancer Research. 15(10):3305-14. Abstract
Paulson TG, Galipeau PC, Xu L, Kissel HD, Li X, Blount PL, Sanchez CA, Odze RD, Reid BJ.  2008.  p16 mutation spectrum in the premalignant condition Barrett's esophagus.. PloS one. 3(11):e3809. Abstract
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Reid BJ, Paulson TG, Li X.  2015.  Genetic Insights in Barrett's Esophagus and Esophageal Adenocarcinoma.. Gastroenterology. 149(5):1142-. Abstract
Reid BJ, Li X, Galipeau PC, Vaughan TL.  2010.  Barrett's oesophagus and oesophageal adenocarcinoma: time for a new synthesis.. Nature reviews. Cancer. 10(2):87-101. Abstract
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Srivastava A, Golden KL, Sanchez CA, Liu K, Fong PY, Li X, Cowan DS, Rabinovitch PS, Reid BJ, Blount PL et al..  2015.  High Goblet Cell Count Is Inversely Associated with Ploidy Abnormalities and Risk of Adenocarcinoma in Barrett's Esophagus.. PloS one. 7:e0133403. Abstract
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Wang X, Li X, Cheng Y, Sun X, Sun X, Self S, Kooperberg C, Dai JY.  2015.  Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma.. Human genomics. 9(1):22. Abstract