Center-Authored Papers

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Journal Article
Zhou X, Zheng W, Nagana Gowda GA, Raftery D, Donkin SS, Bequette B, Teegarden D.  2016.  1,25-Dihydroxyvitamin D inhibits glutamine metabolism in Harvey-ras transformed MCF10A human breast epithelial cell.. The Journal of steroid biochemistry and molecular biology. 163:147-56. Abstract
Tayyari F, Gowda NGA, Gu H, Raftery D.  2013.  15N-cholamine--a smart isotope tag for combining NMR- and MS-based metabolite profiling.. Analytical chemistry. 85(18):8715-21. Abstract
Dai D-F, Karunadharma PP, Chiao YA, Basisty N, Crispin D, Hsieh EJ, Chen T, Gu H, Djukovic D, Raftery D et al..  2014.  Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart.. Aging cell. Abstract
Nagana Gowda GA, Raftery D.  2015.  Can NMR solve some significant challenges in metabolomics? Journal of magnetic resonance (San Diego, Calif. : 1997). Abstract
Buas MF, Gu H, Djukovic D, Zhu J, Onstad L, Reid BJ, Raftery D, Vaughan TL.  2017.  Candidate serum metabolite biomarkers for differentiating gastroesophageal reflux disease, Barrett's esophagus, and high-grade dysplasia/esophageal adenocarcinoma.. Metabolomics : Official journal of the Metabolomic Society. 13(3) Abstract
Appiah-Amponsah E, Owusu-Sarfo K, Gowda NGA, Ye T, Raftery D.  2013.  Combining Hydrophilic Interaction Chromatography (HILIC) and Isotope Tagging for Off-Line LC-NMR Applications in Metabolite Analysis.. Metabolites. 3(3):575-91. Abstract
Deng L, Gu H, Zhu J, Nagana Gowda GA, Djukovic D, Chiorean GE, Raftery D.  2016.  Combining NMR and LC/MS Using Backward Variable Elimination: Metabolomics Analysis of Colorectal Cancer, Polyps, and Healthy Controls.. Analytical chemistry. 88(16):7975-83. Abstract
Li T, Zhang Z, Kolwicz SC, Abell L, Roe ND, Kim M, Zhou B, Cao Y, Ritterhoff J, Gu H et al..  2017.  Defective Branched-Chain Amino Acid Catabolism Disrupts Glucose Metabolism and Sensitizes the Heart to Ischemia-Reperfusion Injury.. Cell metabolism. 25(2):374-385. Abstract
Carroll PA, Diolaiti D, McFerrin L, Gu H, Djukovic D, Du J, Cheng PF, Anderson S, Ulrich M, Hurley JB et al..  2015.  Deregulated Myc requires MondoA/Mlx for metabolic reprogramming and tumorigenesis.. Cancer cell. 27(2):271-85. Abstract
Neto FC, Pilon AC, Selegato DM, Freire RT, Gu H, Raftery D, Lopes NP, Castro-Gamboa I.  2016.  Dereplication of Natural Products Using GC-TOF Mass Spectrometry: Improved Metabolite Identification by Spectral Deconvolution Ratio Analysis.. Frontiers in molecular biosciences. 3:59. Abstract
Bowers J, Hughes E, Skill N, Maluccio M, Raftery D.  2014.  Detection of hepatocellular carcinoma in hepatitis C patients: Biomarker discovery by LC-MS.. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences. Abstract
Lampe JW, Huang Y, Neuhouser ML, Tinker LF, Song X, Schoeller DA, Kim S, Raftery D, Di C, Zheng C et al..  2016.  Dietary biomarker evaluation in a controlled feeding study in women from the Women's Health Initiative cohort.. The American journal of clinical nutrition. Abstract
Nagana Gowda GA, Gowda YN, Raftery D.  2015.  Expanding the limits of human blood metabolite quantitation using NMR spectroscopy.. Analytical chemistry. 87(1):706-15. Abstract
Chen C, Deng L, Wei S, Nagana Gowda GA, Gu H, Chiorean GE, Abu Zaid M, Harrison ML, Pekny JF, Loehrer PJ et al..  2015.  Exploring Metabolic Profile Differences between Colorectal Polyp Patients and Controls Using Seemingly Unrelated Regression.. Journal of proteome research. Abstract
Reyes NL, Banks GB, Tsang M, Margineantu D, Gu H, Djukovic D, Chan J, Torres M, Liggitt DH, Hirenallur-S DK et al..  2015.  Fnip1 regulates skeletal muscle fiber type specification, fatigue resistance, and susceptibility to muscular dystrophy.. Proceedings of the National Academy of Sciences of the United States of America. 112(2):424-9. Abstract
Markley JL, Brüschweiler R, Edison AS, Eghbalnia HR, Powers R, Raftery D, Wishart DS.  2016.  The future of NMR-based metabolomics.. Current opinion in biotechnology. 43:34-40. Abstract
Gu H, Zhang P, Zhu J, Raftery D.  2015.  Globally Optimized Targeted Mass Spectrometry: Reliable Metabolomics Analysis with Broad Coverage.. Analytical chemistry. 87(24):12355-62. Abstract
Chao JR, Knight K, Engel AL, Jankowski C, Wang Y, Manson MA, Gu H, Djukovic D, Raftery D, Hurley JB et al..  2017.  Human Retinal Pigment Epithelium Cells prefer proline as a nutrient and transport metabolic intermediates to the retinal side.. The Journal of biological chemistry. Abstract
Buas MF, Gu H, Djukovic D, Zhu J, Drescher CW, Urban ND, Raftery D, Li CI.  2015.  Identification of novel candidate plasma metabolite biomarkers for distinguishing serous ovarian carcinoma and benign serous ovarian tumors.. Gynecologic oncology. Abstract
Centini R, Tsang M, Iwata T, Park H, Delrow J, Margineantu D, Iritani BM, Gu H, Liggitt DH, Kang J et al..  2018.  Loss of Fnip1 alters kidney developmental transcriptional program and synergizes with TSC1 loss to promote mTORC1 activation and renal cyst formation.. PloS one. 13(6):e0197973. Abstract
Nagana Gowda GA, Gowda YN, Raftery D.  2015.  Massive glutamine cyclization to pyroglutamic Acid in human serum discovered using NMR spectroscopy.. Analytical chemistry. 87(7):3800-5. Abstract
Zhang S, Liu L, Steffen D, Ye T, Raftery D.  2012.  Metabolic profiling of gender: Headspace-SPME/GC–MS and 1H NMR analysis of urine. Metabolomics. 8(2):323-334.
Srinivasan S, Morgan MT, Fiedler TL, Djukovic D, Hoffman NG, Raftery D, Marrazzo JM, Fredricks DN.  2015.  Metabolic signatures of bacterial vaginosis.. mBio. 6(2) Abstract
Sperber H, Mathieu J, Wang Y, Ferreccio A, Hesson J, Xu Z, Fischer KA, Devi A, Detraux D, Gu H et al..  2015.  The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition.. Nature cell biology. 17(12):1523-1535. Abstract
Gu H, Du J, Neto FC, Carroll PA, Turner SJ, Chiorean GE, Eisenman RN, Raftery D.  2015.  Metabolomics method to comprehensively analyze amino acids in different domains.. The Analyst. 140(8):2726-34. Abstract