Center-Authored Papers

Filters: Author is McCoy, Connor O  [Clear All Filters]
2012
Srinivasan S, Hoffman NG, Morgan MT, Matsen FA, Fiedler TL, Hall RW, Ross FJ, McCoy CO, Bumgarner R, Marrazzo JM et al..  2012.  Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria.. PloS one. 7(6):e37818. Abstract
Lim ES, Fregoso OI, McCoy CO, Matsen FA, Malik HS, Emerman M.  2012.  The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx.. Cell host & microbe. 11(2):194-204. Abstract
Lehman DA, Wanalwa DC, McCoy CO, Matsen FA, Langat A, Chohan BH, Benki-Nugent S, Custers-Allen R, Bushman FD, John-Stewart GC et al..  2012.  Low-frequency nevirapine resistance at multiple sites may predict treatment failure in infants on nevirapine-based treatment.. Journal of acquired immune deficiency syndromes (1999). Abstract
2013
McCoy CO, Matsen FA.  2013.  Abundance-weighted phylogenetic diversity measures distinguish microbial community states and are robust to sampling depth.. PeerJ. 1:e157. Abstract
Ronen K, McCoy CO, Matsen FA, Boyd DF, Emery S, Odem-Davis K, Jaoko W, Mandaliya K, McClelland SR, Richardson BA et al..  2013.  HIV-1 superinfection occurs less frequently than initial infection in a cohort of high-risk Kenyan women.. PLoS pathogens. 9(8):e1003593. Abstract
McCoy CO, Gallagher A, Hoffman NG, Matsen FA.  2013.  nestly--a framework for running software with nested parameter choices and aggregating results.. Bioinformatics (Oxford, England). 29(3):387-8. Abstract
Matsen FA, Gallagher A, McCoy CO.  2013.  Minimizing the average distance to a closest leaf in a phylogenetic tree.. Systematic biology. 62(6):824-36. Abstract
2015
Lehman DA, Baeten JM, McCoy CO, Weis JF, Peterson D, Mbara G, Donnell D, Thomas KK, Hendrix CW, Marzinke MA et al..  2015.  Risk of drug resistance among persons acquiring HIV within a randomized clinical trial of single- or dual-agent preexposure prophylaxis.. The Journal of infectious diseases. 211(8):1211-8. Abstract
McCoy CO, Bedford T, Minin VN, Bradley P, Robins H, Matsen FA.  2015.  Quantifying evolutionary constraints on B-cell affinity maturation.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 370(1676) Abstract
2016
Weis JF, Baeten JM, McCoy CO, Warth C, Donnell D, Thomas KK, Hendrix CW, Marzinke MA, Mugo N, Iv FMA et al..  2016.  Preexposure prophylaxis-selected drug resistance decays rapidly after drug cessation.. AIDS (London, England). 30(1):31-5. Abstract