Center-Authored Papers

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Zhao LP, Bolouri H.  2016.  Object-oriented regression for building predictive models with high dimensional omics data from translational studies.. Journal of biomedical informatics. Abstract
Zhao LP, Carlsson A, Elding Larsson H, Forsander G, Ivarsson SA, Kockum I, Ludvigsson J, Marcus C, Persson M, Samuelsson U et al..  2017.  Building and Validating a Prediction model for Pediatric Type 1 Diabetes Risk Using Next Generation Targeted Sequencing of Class II HLA Genes.. Diabetes/metabolism research and reviews. Abstract
Zhao LP, Bolouri H, Zhao M, Geraghty DE, Lernmark Å.  2016.  An Object-Oriented Regression for Building Disease Predictive Models with Multiallelic HLA Genes.. Genetic epidemiology. 40(4):315-32. Abstract
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Toledo CM, Ding Y, Hoellerbauer P, Davis RJ, Basom R, Girard EJ, Lee E, Corrin P, Hart T, Bolouri H et al..  2015.  Genome-wide CRISPR-Cas9 Screens Reveal Loss of Redundancy between PKMYT1 and WEE1 in Glioblastoma Stem-like Cells.. Cell reports. 13(11):2425-39. Abstract
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Ramamurthy R, Hughes M, Morris V, Bolouri H, Gerbing RB, Wang Y-C, Loken MR, Raimondi SC, Hirsch BA, Gamis AS et al..  2016.  miR-155 expression and correlation with clinical outcome in pediatric AML: A report from Children's Oncology Group.. Pediatric blood & cancer. Abstract
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Ozawa T, Arora S, Szulzewsky F, Juric-Sekhar G, Miyajima Y, Bolouri H, Yasui Y, Barber J, Kupp R, Dalton J et al..  2018.  A De Novo Mouse Model of C11orf95-RELA Fusion-Driven Ependymoma Identifies Driver Functions in Addition to NF-κB.. Cell reports. 23(13):3787-3797. Abstract
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Nguyen LT, Tretiakova MS, Silvis MR, Lucas J, Klezovitch O, Coleman I, Bolouri H, Kutyavin VI, Morrissey C, True LD et al..  2015.  ERG Activates the YAP1 Transcriptional Program and Induces the Development of Age-Related Prostate Tumors.. Cancer cell. 27(6):797-808. Abstract
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Lindberg N, Jiang Y, Xie Y, Bolouri H, Kastemar M, Olofsson T, Holland EC, Uhrbom L.  2014.  Oncogenic signaling is dominant to cell of origin and dictates astrocytic or oligodendroglial tumor development from oligodendrocyte precursor cells.. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34(44):14644-51. Abstract
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Kumar A, Coleman I, Morrissey C, Zhang X, True LD, Gulati R, Etzioni R, Bolouri H, Montgomery B, White T et al..  2016.  Substantial interindividual and limited intraindividual genomic diversity among tumors from men with metastatic prostate cancer.. Nature medicine. Abstract
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Jia D, Augert A, Kim D-W, Eastwood E, Wu N, Ibrahim AH, Kim K-B, Dunn CT, Pillai SPS, Gazdar AF et al..  2018.  Loss Drives Small Cell Lung Cancer and Increases Sensitivity to HDAC Inhibition.. Cancer discovery. Abstract
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Cimino PJ, Zager M, McFerrin L, Wirsching H-G, Bolouri H, Hentschel B, von Deimling A, Jones D, Reifenberger G, Weller M et al..  2017.  Multidimensional scaling of diffuse gliomas: application to the 2016 World Health Organization classification system with prognostically relevant molecular subtype discovery.. Acta neuropathologica communications. 5(1):39. Abstract
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Bolouri H, Zhao LP, Holland EC.  2016.  Big data visualization identifies the multidimensional molecular landscape of human gliomas.. Proceedings of the National Academy of Sciences of the United States of America. Abstract
Bolouri H.  2014.  Modeling genomic regulatory networks with big data.. Trends in genetics : TIG. Abstract
Bolouri H, Davidson EH.  2010.  The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example.. Developmental biology. 340(2):170-8. Abstract
Bolouri H, Ruzzo WL.  2012.  Integration of 198 ChIP-seq Datasets Reveals Human cis-Regulatory Regions.. Journal of computational biology : a journal of computational molecular cell biology. 19(9):989-97. Abstract
Bolouri H.  2014.  Network dynamics in the tumor microenvironment.. Seminars in cancer biology. Abstract
Bolouri H, Dulepet R, Angerman M.  2011.  Menu-driven cloud computing and resource sharing for R and Bioconductor.. Bioinformatics (Oxford, England). 27(16):2309-10. Abstract
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Amankulor NM, Kim Y, Arora S, Kargl J, Szulzewsky F, Hanke M, Margineantu DH, Rao A, Bolouri H, Delrow J et al..  2017.  Mutant IDH1 regulates the tumor-associated immune system in gliomas.. Genes & development. 31(8):774-786. Abstract