Center-Authored Papers

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McDavid A, Dennis L, Danaher P, Finak G, Krouse M, Wang A, Webster P, Beechem J, Gottardo R.  2014.  Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells.. PLoS computational biology. 10(7):e1003696. Abstract
Finak G, McDavid A, Chattopadhyay P, Dominguez M, De Rosa S, Roederer M, Gottardo R.  2013.  Mixture models for single-cell assays with applications to vaccine studies.. Biostatistics (Oxford, England). Abstract
Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M et al..  2015.  MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.. Genome biology. 16:278. Abstract
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Dominguez MH, Chattopadhyay PK, Ma S, Lamoreaux L, McDavid A, Finak G, Gottardo R, Koup RA, Roederer M.  2013.  Highly multiplexed quantitation of gene expression on single cells.. Journal of immunological methods. 391(1-2):133-45. Abstract
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Crosslin DR, McDavid A, Weston N, Zheng X, Hart E, de Andrade M, Kullo IJ, McCarty CA, Doheny KF, Pugh E et al..  2013.  Genetic variation associated with circulating monocyte count in the eMERGE Network.. Human molecular genetics. 22(10):2119-2127. Abstract
Crosslin DR, McDavid A, Weston N, Nelson SC, Zheng X, Hart E, de Andrade M, Kullo IJ, McCarty CA, Doheny KF et al..  2012.  Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.. Human genetics. 131(4):639-652. Abstract
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Reding KW, Carlson CS, Kahsai O, Chen CC, McDavid A, Doody DR, Chen C, Ornelas I, Lowe K, Bernstein L et al..  2012.  Examination of ancestral informative markers and self-reported race with tumor characteristics of breast cancer among black and white women.. Breast cancer research and treatment. Abstract
McDavid A, Crane PK, Newton KM, Crosslin DR, McCormick W, Weston N, Ehrlich K, Hart E, Harrison R, Kukull WA et al..  2013.  Enhancing the power of genetic association studies through the use of silver standard cases derived from electronic medical records.. PloS one. 8(6):e63481. Abstract
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Slichter CK, McDavid A, Miller HW, Finak G, Seymour BJ, McNevin JP, Diaz G, Czartoski JL, McElrath MJ, Gottardo R et al..  2016.  Distinct activation thresholds of human conventional and innate-like memory T cells.. JCI insight. 1(8) Abstract
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McDavid A, Finak G, Gottardo R.  2016.  The contribution of cell cycle to heterogeneity in single-cell RNA-seq data.. Nature biotechnology. 34(6):591-3.
Schick UM, McDavid A, Crane PK, Weston N, Ehrlich K, Newton KM, Wallace R, Bookman E, Harrison T, Aragaki A et al..  2013.  Confirmation of the reported association of clonal chromosomal mosaicism with an increased risk of incident hematologic cancer.. PloS one. 8(3):e59823. Abstract