Center-Authored Papers

Filters: Author is Yan, Ping  [Clear All Filters]
2011
Whiteaker JR, Lin C, Kennedy J, Hou L, Trute M, Sokal I, Yan P, Schoenherr RM, Zhao L, Voytovich UJ et al..  2011.  A targeted proteomics-based pipeline for verification of biomarkers in plasma.. Nature biotechnology. 29(7):625-34. Abstract
2012
Schoenherr RM, Whiteaker JR, Zhao L, Ivey RG, Trute M, Kennedy J, Voytovich UJ, Yan P, Lin C, Paulovich AG.  2012.  Multiplexed quantification of estrogen receptor and HER2/Neu in tissue and cell lysates by peptide immunoaffinity enrichment mass spectrometry.. Proteomics. 12(8):1253-60. Abstract
2014
Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B et al..  2014.  Panorama: A Targeted Proteomics Knowledge Base.. Journal of proteome research. Abstract
Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG et al..  2014.  Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.. Nature methods. 11(2):149-55. Abstract
Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, Maclean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ et al..  2014.  CPTAC Assay Portal: a repository of targeted proteomic assays.. Nature methods. 11(7):703-4.
2015
Schoenherr RM, Saul RG, Whiteaker JR, Yan P, Whiteley GR, Paulovich AG.  2015.  Anti-peptide monoclonal antibodies generated for immuno-multiple reaction monitoring-mass spectrometry assays have a high probability of supporting Western blot and ELISA.. Molecular & cellular proteomics : MCP. 14(2):382-98. Abstract
Whiteaker JR, Zhao L, Yan P, Ivey RG, Voytovich UJ, Moore HD, Lin C, Paulovich AG.  2015.  Peptide immunoaffinity enrichment and targeted mass spectrometry enables multiplex, quantitative pharmacodynamic studies of phospho-signaling.. Molecular & cellular proteomics : MCP. Abstract
Kennedy JJ, Yan P, Zhao L, Ivey RG, Voytovich UJ, Moore HD, Lin C, Pogosova-Agadjanyan EL, Stirewalt DL, Reding KW et al..  2015.  Immobilized metal affinity chromatography coupled to multiple reaction monitoring enables reproducible quantification of phospho-signaling.. Molecular & cellular proteomics : MCP. Abstract
2016
Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, Maclean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ et al..  2016.  Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.. Methods in molecular biology (Clifton, N.J.). 1410:223-36. Abstract
Schoenherr RM, Zhao L, Ivey RG, Voytovich UJ, Kennedy J, Yan P, Lin C, Whiteaker JR, Paulovich AG.  2016.  Commercially available antibodies can be applied in quantitative multiplexed peptide immunoaffinity enrichment targeted mass spectrometry assays.. Proteomics. Abstract
Kennedy JJ, Whiteaker JR, Schoenherr RM, Yan P, Allison K, Shipley M, Lerch M, Hoofnagle AN, Baird GS, Paulovich AG.  2016.  Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues.. Journal of proteome research. 15(8):2717-2728. Abstract
Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F et al..  2016.  Proteogenomics connects somatic mutations to signalling in breast cancer.. Nature. 534(7605):55-62. Abstract
Huang D, Piening BD, Kennedy JJ, Lin C, Jones-Weinert CW, Yan P, Paulovich AG.  2016.  DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae.. Genetics. 203(1):353-368. Abstract