Center-Authored Papers

Filters: Author is Groudine, Mark  [Clear All Filters]
2008
Rodriguez J, Muñoz M, Vives L, Frangou CG, Groudine M, Peinado MA.  2008.  Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells.. Proceedings of the National Academy of Sciences of the United States of America. 105(50):19809-14. Abstract
Sawado T, Halow J, Im H, Ragoczy T, Bresnick EH, Bender MA, Groudine M.  2008.  H3 K79 dimethylation marks developmental activation of the beta-globin gene but is reduced upon LCR-mediated high-level transcription.. Blood. 112(2):406-14. Abstract
2009
Ragoczy T, Groudine M.  2009.  The nucleus inside out--through a rod darkly.. Cell. 137(2):205-7. Abstract
Rajapakse I, Perlman MD, Scalzo D, Kooperberg C, Groudine M, Kosak ST.  2009.  The emergence of lineage-specific chromosomal topologies from coordinate gene regulation.. Proceedings of the National Academy of Sciences of the United States of America. 106(16):6679-84. Abstract
Sankaran VG, Xu J, Ragoczy T, Ippolito GC, Walkley CR, Maika SD, Fujiwara Y, Ito M, Groudine M, Bender MA et al..  2009.  Developmental and species-divergent globin switching are driven by BCL11A.. Nature. 460(7259):1093-7. Abstract
Fromm G, de Vries C, Byron R, Fields J, Fiering S, Groudine M, Bender MA, Palis J, Bulger M.  2009.  Histone hyperacetylation within the beta-globin locus is context-dependent and precedes high-level gene expression.. Blood. 114(16):3479-88. Abstract
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO et al..  2009.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.. Science (New York, N.Y.). 326(5950):289-93. Abstract
2010
Rajapakse I, Scalzo D, Tapscott SJ, Kosak ST, Groudine M.  2010.  Networking the nucleus.. Molecular systems biology. 6:395. Abstract
Bulger M, Groudine M.  2010.  Enhancers: the abundance and function of regulatory sequences beyond promoters.. Developmental biology. 339(2):250-7. Abstract
Song S-H, Kim AR, Ragoczy T, Bender MA, Groudine M, Dean A.  2010.  Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation.. Blood. 116(13):2356-64. Abstract
2011
Bulger M, Groudine M.  2011.  Functional and mechanistic diversity of distal transcription enhancers.. Cell. 144(3):327-39. Abstract
Rajapakse I, Scalzo D, Groudine M.  2011.  Losing control: Cancer's catastrophic transition.. Nucleus (Austin, Tex.). 2(4) Abstract
Rajapakse I, Groudine M.  2011.  On emerging nuclear order.. The Journal of cell biology. 192(5):711-21. Abstract
Chien R, Zeng W, Kawauchi S, Bender MA, Santos R, Gregson HC, Schmiesing JA, Newkirk DA, Kong X, Ball AR et al..  2011.  Cohesin mediates chromatin interactions that regulate mammalian β-globin expression.. The Journal of biological chemistry. 286(20):17870-8. Abstract
Rajapakse I, Groudine M, Mesbahi M.  2011.  Dynamics and control of state-dependent networks for probing genomic organization.. Proceedings of the National Academy of Sciences of the United States of America. 108(42):17257-62. Abstract
Sankaran VG, Xu J, Byron R, Greisman HA, Fisher C, Weatherall DJ, Sabath DE, Groudine M, Orkin SH, Premawardhena A et al..  2011.  A functional element necessary for fetal hemoglobin silencing.. The New England journal of medicine. 365(9):807-14. Abstract
2012
Bender MA, Ragoczy T, Lee J, Byron R, Telling A, Dean A, Groudine M.  2012.  The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation.. Blood. 119(16):3820-3827. Abstract
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
Rincon-Arano H, Halow J, Delrow JJ, Parkhurst SM, Groudine M.  2012.  UpSET Recruits HDAC Complexes and Restricts Chromatin Accessibility and Acetylation at Promoter Regions.. Cell. 151(6):1214-28. Abstract
Rajapakse I, Groudine M, Mesbahi M.  2012.  What can systems theory of networks offer to biology? PLoS computational biology. 8(6):e1002543.
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
2013
Gatchalian J, Fütterer A, Rothbart SB, Tong Q, Rincon-Arano H, Sánchez de Diego A, Groudine M, Strahl BD, Martínez-A C, van Wely KHM et al..  2013.  Dido3 PHD modulates cell differentiation and division.. Cell reports. 4(1):148-58. Abstract
Ritland Politz JC, Scalzo D, Groudine M.  2013.  Something Silent This Way Forms: The Functional Organization of the Nuclear Repressive Compartment.. Annual review of cell and developmental biology. Abstract
Ali M, Rincón-Arano H, Zhao W, Rothbart SB, Tong Q, Parkhurst SM, Strahl BD, Deng L-W, Groudine M, Kutateladze TG.  2013.  Molecular basis for chromatin binding and regulation of MLL5.. Proceedings of the National Academy of Sciences of the United States of America. 110(28):11296-301. Abstract
Politz JRC, Ragoczy T, Groudine M.  2013.  When untethered, something silent inside comes.. Nucleus (Austin, Tex.). 4(3):153-5. Abstract