Center-Authored Papers

Filters: Author is Groudine, Mark  [Clear All Filters]
Journal Article
Tong Q, Mazur SJ, Rincon-Arano H, Rothbart SB, Kuznetsov DM, Cui G, Liu WH, Gete Y, Klein BJ, Jenkins L et al..  2015.  An acetyl-methyl switch drives a conformational change in p53.. Structure (London, England : 1993). 23(2):322-31. Abstract
Rodriguez J, Muñoz M, Vives L, Frangou CG, Groudine M, Peinado MA.  2008.  Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells.. Proceedings of the National Academy of Sciences of the United States of America. 105(50):19809-14. Abstract
Chien R, Zeng W, Kawauchi S, Bender MA, Santos R, Gregson HC, Schmiesing JA, Newkirk DA, Kong X, Ball AR et al..  2011.  Cohesin mediates chromatin interactions that regulate mammalian β-globin expression.. The Journal of biological chemistry. 286(20):17870-8. Abstract
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO et al..  2009.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.. Science (New York, N.Y.). 326(5950):289-93. Abstract
Stergachis AB, Neph S, Sandstrom R, Haugen E, Reynolds AP, Zhang M, Byron R, Canfield T, Stelhing-Sun S, Lee K et al..  2014.  Conservation of trans-acting circuitry during mammalian regulatory evolution.. Nature. 515(7527):365-70. Abstract
Sankaran VG, Xu J, Ragoczy T, Ippolito GC, Walkley CR, Maika SD, Fujiwara Y, Ito M, Groudine M, Bender MA et al..  2009.  Developmental and species-divergent globin switching are driven by BCL11A.. Nature. 460(7259):1093-7. Abstract
Gatchalian J, Fütterer A, Rothbart SB, Tong Q, Rincon-Arano H, Sánchez de Diego A, Groudine M, Strahl BD, Martínez-A C, van Wely KHM et al..  2013.  Dido3 PHD modulates cell differentiation and division.. Cell reports. 4(1):148-58. Abstract
Conerly ML, Yao Z, Zhong JW, Groudine M, Tapscott SJ.  2016.  Distinct Activities of Myf5 and MyoD Indicate Separate Roles in Skeletal Muscle Lineage Specification and Differentiation.. Developmental cell. 36(4):375-85. Abstract
Rajapakse I, Groudine M, Mesbahi M.  2011.  Dynamics and control of state-dependent networks for probing genomic organization.. Proceedings of the National Academy of Sciences of the United States of America. 108(42):17257-62. Abstract
Rajapakse I, Perlman MD, Scalzo D, Kooperberg C, Groudine M, Kosak ST.  2009.  The emergence of lineage-specific chromosomal topologies from coordinate gene regulation.. Proceedings of the National Academy of Sciences of the United States of America. 106(16):6679-84. Abstract
Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R et al..  2012.  An encyclopedia of mouse DNA elements (Mouse ENCODE).. Genome biology. 13:418. Abstract
Bulger M, Groudine M.  2010.  Enhancers: the abundance and function of regulatory sequences beyond promoters.. Developmental biology. 339(2):250-7. Abstract
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract
Bulger M, Groudine M.  2011.  Functional and mechanistic diversity of distal transcription enhancers.. Cell. 144(3):327-39. Abstract
Sankaran VG, Xu J, Byron R, Greisman HA, Fisher C, Weatherall DJ, Sabath DE, Groudine M, Orkin SH, Premawardhena A et al..  2011.  A functional element necessary for fetal hemoglobin silencing.. The New England journal of medicine. 365(9):807-14. Abstract
Ragoczy T, Telling A, Scalzo D, Kooperberg C, Groudine M.  2014.  Functional redundancy in the nuclear compartmentalization of the late-replicating genome.. Nucleus (Austin, Tex.). 5(6):626-35. Abstract
Sawado T, Halow J, Im H, Ragoczy T, Bresnick EH, Bender MA, Groudine M.  2008.  H3 K79 dimethylation marks developmental activation of the beta-globin gene but is reduced upon LCR-mediated high-level transcription.. Blood. 112(2):406-14. Abstract
Fromm G, de Vries C, Byron R, Fields J, Fiering S, Groudine M, Bender MA, Palis J, Bulger M.  2009.  Histone hyperacetylation within the beta-globin locus is context-dependent and precedes high-level gene expression.. Blood. 114(16):3479-88. Abstract
Klein BJ, Piao L, Xi Y, Rincon-Arano H, Rothbart SB, Peng D, Wen H, Larson C, Zhang X, Zheng X et al..  2014.  The Histone-H3K4-Specific Demethylase KDM5B Binds to Its Substrate and Product through Distinct PHD Fingers.. Cell reports. 6(2):325-35. Abstract
Bender MA, Ragoczy T, Lee J, Byron R, Telling A, Dean A, Groudine M.  2012.  The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation.. Blood. 119(16):3820-3827. Abstract
Rajapakse I, Scalzo D, Groudine M.  2011.  Losing control: Cancer's catastrophic transition.. Nucleus (Austin, Tex.). 2(4) Abstract
Ali M, Rincón-Arano H, Zhao W, Rothbart SB, Tong Q, Parkhurst SM, Strahl BD, Deng L-W, Groudine M, Kutateladze TG.  2013.  Molecular basis for chromatin binding and regulation of MLL5.. Proceedings of the National Academy of Sciences of the United States of America. 110(28):11296-301. Abstract
Vierstra J, Rynes E, Sandstrom R, Zhang M, Canfield T, Hansen SR, Stehling-Sun S, Sabo PJ, Byron R, Humbert R et al..  2014.  Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.. Science (New York, N.Y.). 346(6212):1007-12. Abstract
Song S-H, Kim AR, Ragoczy T, Bender MA, Groudine M, Dean A.  2010.  Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation.. Blood. 116(13):2356-64. Abstract
Rajapakse I, Scalzo D, Tapscott SJ, Kosak ST, Groudine M.  2010.  Networking the nucleus.. Molecular systems biology. 6:395. Abstract