Center-Authored Papers

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Yoon K-H, Ragoczy T, Lu Z, Kondoh K, Kuang D, Groudine M, Buck LB.  2015.  Olfactory receptor genes expressed in distinct lineages are sequestered in different nuclear compartments.. Proceedings of the National Academy of Sciences of the United States of America. 112(18):E2403-9. Abstract
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Vierstra J, Rynes E, Sandstrom R, Zhang M, Canfield T, Hansen SR, Stehling-Sun S, Sabo PJ, Byron R, Humbert R et al..  2014.  Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.. Science (New York, N.Y.). 346(6212):1007-12. Abstract
Verboon JM, Rincon-Arano H, Werwie TR, Delrow JJ, Scalzo D, Nandakumar V, Groudine M, Parkhurst SM.  2015.  Wash interacts with lamin and affects global nuclear organization.. Current biology : CB. 25(6):804-10. Abstract
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Tong Q, Mazur SJ, Rincon-Arano H, Rothbart SB, Kuznetsov DM, Cui G, Liu WH, Gete Y, Klein BJ, Jenkins L et al..  2015.  An acetyl-methyl switch drives a conformational change in p53.. Structure (London, England : 1993). 23(2):322-31. Abstract
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Stergachis AB, Neph S, Sandstrom R, Haugen E, Reynolds AP, Zhang M, Byron R, Canfield T, Stelhing-Sun S, Lee K et al..  2014.  Conservation of trans-acting circuitry during mammalian regulatory evolution.. Nature. 515(7527):365-70. Abstract
Song S-H, Kim AR, Ragoczy T, Bender MA, Groudine M, Dean A.  2010.  Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation.. Blood. 116(13):2356-64. Abstract
Skene PJ, Hernandez AE, Groudine M, Henikoff S.  2014.  The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1.. eLife. 3:e02042. Abstract
Sawado T, Halow J, Im H, Ragoczy T, Bresnick EH, Bender MA, Groudine M.  2008.  H3 K79 dimethylation marks developmental activation of the beta-globin gene but is reduced upon LCR-mediated high-level transcription.. Blood. 112(2):406-14. Abstract
Sankaran VG, Xu J, Ragoczy T, Ippolito GC, Walkley CR, Maika SD, Fujiwara Y, Ito M, Groudine M, Bender MA et al..  2009.  Developmental and species-divergent globin switching are driven by BCL11A.. Nature. 460(7259):1093-7. Abstract
Sankaran VG, Xu J, Byron R, Greisman HA, Fisher C, Weatherall DJ, Sabath DE, Groudine M, Orkin SH, Premawardhena A et al..  2011.  A functional element necessary for fetal hemoglobin silencing.. The New England journal of medicine. 365(9):807-14. Abstract
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Rodriguez J, Muñoz M, Vives L, Frangou CG, Groudine M, Peinado MA.  2008.  Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells.. Proceedings of the National Academy of Sciences of the United States of America. 105(50):19809-14. Abstract
Ritland Politz JC, Scalzo D, Groudine M.  2013.  Something Silent This Way Forms: The Functional Organization of the Nuclear Repressive Compartment.. Annual review of cell and developmental biology. Abstract
Rincon-Arano H, Halow J, Delrow JJ, Parkhurst SM, Groudine M.  2012.  UpSET Recruits HDAC Complexes and Restricts Chromatin Accessibility and Acetylation at Promoter Regions.. Cell. 151(6):1214-28. Abstract
Rincon-Arano H, Parkhurst SM, Groudine M.  2013.  UpSET-ing the balance: Modulating open chromatin features in metazoan genomes.. Fly. 7(3):153-60. Abstract
Rajapakse I, Groudine M, Mesbahi M.  2012.  What can systems theory of networks offer to biology? PLoS computational biology. 8(6):e1002543.
Rajapakse I, Groudine M, Mesbahi M.  2011.  Dynamics and control of state-dependent networks for probing genomic organization.. Proceedings of the National Academy of Sciences of the United States of America. 108(42):17257-62. Abstract
Rajapakse I, Scalzo D, Groudine M.  2011.  Losing control: Cancer's catastrophic transition.. Nucleus (Austin, Tex.). 2(4) Abstract
Rajapakse I, Groudine M.  2011.  On emerging nuclear order.. The Journal of cell biology. 192(5):711-21. Abstract
Rajapakse I, Perlman MD, Scalzo D, Kooperberg C, Groudine M, Kosak ST.  2009.  The emergence of lineage-specific chromosomal topologies from coordinate gene regulation.. Proceedings of the National Academy of Sciences of the United States of America. 106(16):6679-84. Abstract
Rajapakse I, Scalzo D, Tapscott SJ, Kosak ST, Groudine M.  2010.  Networking the nucleus.. Molecular systems biology. 6:395. Abstract
Ragoczy T, Groudine M.  2009.  The nucleus inside out--through a rod darkly.. Cell. 137(2):205-7. Abstract
Ragoczy T, Telling A, Scalzo D, Kooperberg C, Groudine M.  2014.  Functional redundancy in the nuclear compartmentalization of the late-replicating genome.. Nucleus (Austin, Tex.). 5(6):626-35. Abstract
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Politz JRC, Ragoczy T, Groudine M.  2013.  When untethered, something silent inside comes.. Nucleus (Austin, Tex.). 4(3):153-5. Abstract
Politz JRC, Scalzo D, Groudine M.  2016.  The redundancy of the mammalian heterochromatic compartment.. Current opinion in genetics & development. 37:1-8. Abstract
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Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK et al..  2012.  An expansive human regulatory lexicon encoded in transcription factor footprints.. Nature. 489(7414):83-90. Abstract