Center-Authored Papers

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RNA, Untranslated
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
Repressor Proteins
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Regulatory Elements, Transcriptional
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
PROTEOMICS
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Protein Conformation
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
Nuclear Proteins
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Molecular Sequence Data
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
MICE
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
mass spectrometry
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
K562 Cells
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
Jurkat Cells
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Insulin-Like Growth Factor II
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Insulator Elements
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Humans
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Human Biology Division
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
GENOMICS
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Genomic Imprinting
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
GENOME
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
DNA-Binding Proteins
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Deoxyribonuclease I
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
Chromosomes, Human
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Chromosome Mapping
Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A et al..  2015.  Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.. Nature methods. 12(1):71-8. Abstract
Chromosomal Proteins, Non-Histone
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract
Chromatin Immunoprecipitation
Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.  2008.  CTCF physically links cohesin to chromatin.. Proceedings of the National Academy of Sciences of the United States of America. 105(24):8309-14. Abstract