Center-Authored Papers

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Carlson CS, Emerson RO, Sherwood AM, Desmarais C, Chung M-W, Parsons JM, Steen MS, LaMadrid-Herrmannsfeldt MA, Williamson DW, Livingston RJ et al..  2013.  Using synthetic templates to design an unbiased multiplex PCR assay.. Nature communications. 4:2680. Abstract
Robins HS, Desmarais C, Matthis J, Livingston R, Andriesen J, Reijonen H, Carlson CS, Nepom G, Yee C, Cerosaletti K.  2012.  Ultra-sensitive detection of rare T cell clones.. Journal of immunological methods. 375(1-2):14-19. Abstract
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Sherwood AM, Emerson RO, Scherer D, Habermann N, Buck K, Staffa J, Desmarais C, Halama N, Jaeger D, Schirmacher P et al..  2013.  Tumor-infiltrating lymphocytes in colorectal tumors display a diversity of T cell receptor sequences that differ from the T cells in adjacent mucosal tissue.. Cancer immunology, immunotherapy : CII. 62(9):1453-1461. Abstract
Chapuis AG, Desmarais C, Emerson R, Schmitt TM, Shibuya K, Lai I, Wagener F, Chou J, Roberts IM, Coffey DG et al..  2017.  Tracking the Fate and Origin of Clinically Relevant Adoptively Transferred CD8(+) T Cells In Vivo.. Science immunology. 2(8) Abstract
Muraro PA, Robins H, Malhotra S, Howell M, Phippard D, Desmarais C, de Paula Alves Sousa A, Griffith LM, Lim N, Nash RA et al..  2014.  T cell repertoire following autologous stem cell transplantation for multiple sclerosis.. The Journal of clinical investigation. Abstract
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Chapuis AG, Afanasiev OK, Iyer JG, Paulson KG, Parvathaneni U, Hwang JH, Lai I, Roberts IM, Sloan HL, Bhatia S et al..  2014.  Regression of metastatic Merkel cell carcinoma following transfer of polyomavirus-specific T cells and therapies capable of re-inducing HLA class-I.. Cancer immunology research. 2(1):27-36. Abstract
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Reiner AP, Wurfel MM, Lange LA, Carlson CS, Nord AS, Carty CL, Rieder MJ, Desmarais C, Jenny NS, Iribarren C et al..  2008.  Polymorphisms of the IL1-receptor antagonist gene (IL1RN) are associated with multiple markers of systemic inflammation.. Arteriosclerosis, thrombosis, and vascular biology. 28(7):1407-12. Abstract
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Maldonado L, Teague JE, Morrow MP, Jotova I, Wu TC, Wang C, Desmarais C, Boyer JD, Tycko B, Robins HS et al..  2014.  Intramuscular Therapeutic Vaccination Targeting HPV16 Induces T Cell Responses That Localize in Mucosal Lesions.. Science translational medicine. 6(221):221ra13. Abstract
Emerson RO, DeWitt WS, Vignali M, Gravley J, Hu JK, Osborne EJ, Desmarais C, Klinger M, Carlson CS, Hansen JA et al..  2017.  Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire.. Nature genetics. Abstract
Pulsipher MA, Carlson C, Langholz B, Wall DA, Schultz KR, Bunin N, Kirsch I, Gastier-Foster JM, Borowitz M, Desmarais C et al..  2015.  IgH-V(D)J NGS-MRD measurement pre- and early post- allo-transplant defines very low and very high risk ALL patients.. Blood. Abstract
Massa C, Robins H, Desmarais C, Riemann D, Fahldieck C, Fornara P, Seliger B.  2017.  Identification of patient-specific and tumor-shared T cell receptor sequences in renal cell carcinoma patients.. Oncotarget. Abstract
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Emerson R, Sherwood A, Desmarais C, Malhotra S, Phippard D, Robins H.  2013.  Estimating the ratio of CD4+ to CD8+ T cells using high-throughput sequence data.. Journal of immunological methods. 391(1-2):14-21. Abstract
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DeWitt WS, Emerson RO, Lindau P, Vignali M, Snyder TM, Desmarais C, Sanders C, Utsugi H, Warren EH, McElrath J et al..  2015.  Dynamics of the cytotoxic T cell response to a model of acute viral infection.. Journal of virology. 89(8):4517-26. Abstract
Sherwood AM, Desmarais C, Livingston RJ, Andriesen J, Haussler M, Carlson CS, Robins HS.  2011.  Deep sequencing of the human TCRγ and TCRβ repertoires suggests that TCRβ rearranges after αβ and γδ T cell commitment.. Science translational medicine. 3(90):90ra61. Abstract
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Gaide O, Emerson RO, Jiang X, Gulati N, Nizza S, Desmarais C, Robins H, Krueger JG, Clark RA, Kupper TS.  2015.  Common clonal origin of central and resident memory T cells following skin immunization.. Nature medicine. Abstract
Suessmuth Y, Mukherjee R, Watkins B, Koura DT, Finstermeier K, Desmarais C, Stempora L, Horan JT, Langston A, Qayed M et al..  2015.  CMV reactivation drives post-transplant T cell reconstitution and results in defects in the underlying TCRβ repertoire.. Blood. Abstract