On combining triads and unrelated subjects data in candidate gene studies: an application to data on testicular cancer.

Publication Type:

Journal Article

Source:

Human heredity, Volume 67, Issue 2, p.88-103 (2009)

Keywords:

2009, Center-Authored Paper, Computer Simulation, Environment, Genetic Predisposition to Disease, Genome-Wide Association Study, Humans, Male, Models, Genetic, Public Health Sciences Division, Research Design, Testicular Neoplasms

Abstract:

Combining data collected from different sources is a cost-effective and time-efficient approach for enhancing the statistical efficiency in estimating weak-to-modest genetic effects or gene-gene or gene-environment interactions. However, combining data across studies becomes complicated when data are collected under different study designs, such as family-based and unrelated individual-based (e.g., population-based case-control design). In this paper, we describe a general method that permits the joint estimation of effects on disease risk of genes, environmental factors, and gene-gene/gene-environment interactions under a hybrid design that includes cases, parents of cases, and unrelated individuals. We provide both asymptotic theory and statistical inference. Extensive simulation experiments demonstrate that the proposed estimation and inferential methods perform well in realistic settings. We illustrate the method by an application to a study of testicular cancer.