Slobodan Beronja

Appointments and Affiliations

Fred Hutchinson Cancer Research Center
Human Biology Division
Assistant Member, Appointed: 2013
Professional Headshot of Slobodan Beronja

Mailing Address

Fred Hutchinson Cancer Research Center
D4-100
P.O. Box 19024
Seattle, Washington 98109-1024
United States

Contact

Phone: (206) 667-7609
Fax: (206) 667-2917
beronja@fredhutch.org

Degrees

Ph.D., University of Toronto, Department of Cell and Systems Biology, 2006.
Honors B.Sc., University of Toronto, Zoology, 2000.

Research Interests

My laboratory studies molecular and cellular mechanisms that are essential for tissue growth during development and tumorigenesis. Our goal is to identifying genes and gene pathways that can be used as targets in cancer therapy with a particular focus on the regulators of the balance between stem cell renewal and differentiation.

We use mouse skin epidermis and epidermal squamous cell carcinoma (SCC) as a model of tissue growth in development and disease. Skin epidermis is a particularly suitable system for our investigation for the following reasons:

Well-defined physiological system: Skin is composed of two compartments, the epithelial epidermis and mesenchymal dermis, separated by a basement membrane. Epidermal growth during embryonic development and its maintenance in the adult are achieved through continuous cycles of progenitor cell self-renewal and differentiation under the control of cell extrinsic signals coming from the surrounding mesenchyme.

Implications for human health: SCC of the skin is the second most common cancer in people, with an estimated 700,000 new cases in the US each year. Fortunately, most lesions are detected early and surgically removed, accounting for disease’s high survival rates. Importantly, ontogeny of epidermal SCC parallels cancers associated with high mortality, including the SCC of the head and neck and the lung SCC.

Tools for analysis of gene function: In addition to standard methods of creating transgenic animals, mouse epidermis can be efficiently and stably targeted through in utero injection of lentivirus. Using lentivirus to express shRNA, for RNAi-mediated gene knockdown, or ORF, for gene overexpression, we can rapidly assess gene function and complex genetic interactions in skin morphogenesis and disease in vivo.

Research efforts in the lab will be divided between several approaches:

1. Candidate-based analysis of gene function in regulation of epidermal tissue growth. We have completed an RNAi screen of ~16,000 mouse genes and uncovered putative regulators of epidermal tissue growth during embryonic development and oncogenic hyperplasia. We will now probe the precise cellular and molecular mechanisms behind the observed growth effects, with a focus on genes that specifically operate within the physiological environment by altering the balance between stem cell renewal and differentiation.

2. Large-scale investigation of modifiers of epidermal tumor initiation. We have been successful in combining the pooled-format lentiviral-mediated RNAi and quantitative Illumina sequencing into a rapid, comprehensive, and relatively low-cost approach to genome-wide gene function analysis during embryogenesis. Next, we are extending the use of the approach to postnatal epidermis, to indentify bona fide enhancers of tumor initiation and progression in the oncogenic Ras animal model. The complexity of our lentiviral pools will vary from patient-specific to genome-wide.

3. Development of a general model of epithelial growth and tumorigenesis. Small modifications in the in utero injection method result in efficient lentiviral transduction of other tissues, including the oral, mammary and airway epithelium. These are distinct from the epidermis in their organization, physiological environment, and rate of developmental and regenerative growth, and carcinomas in these epithelia are the leading cause of tumor-associated deaths worldwide. Using RNAi-mediated gene knockdown we will test general applicability of molecular mechanisms uncovered in our studies of epidermal growth and tumorigenesis.

Previous Positions

2006-2013: Postdoctoral Fellow, The Rockefeller University.

Fellowships and Awards

2011-2016: NIH Pathway to Independence Award-K99/R00, National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS)
2007-2010: HFSP Long-Term Fellowship, Human Frontier Science Program
2001-2006: VSRP Graduate Fellowship in Vision Science, Vision Science Research Program, University of Toronto

Recent Publications

2018
2017
2016
2015
2014
2013
Beronja S, Fuchs E.  2013.  RNAi-mediated gene function analysis in skin.. Methods in molecular biology (Clifton, N.J.). 961:351-61. Abstract
2012
2011
2010
2009
2006
2005
2002

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