Publications Supported by Genomics

Fred Hutch authors reported the use of Genomics in support of the following publications:

Year of Publication: 2018

Year of Publication: 2017

Augert A, Zhang Q, Bates B, Cui M, Wang X, Wildey G, Dowlati A, MacPherson D.  2017.  Small Cell Lung Cancer Exhibits Frequent Inactivating Mutations in the Histone Methyltransferase KMT2D/MLL2: CALGB 151111 (Alliance).. Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer. 12(4):704-713. Abstract

Year of Publication: 2016

Cech JN, Peichel CL.  2016.  Centromere inactivation on a neo-Y fusion chromosome in threespine stickleback fish.. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology. 24(4):437-450. Abstract
Liu X, Yue Z, Yu J, Daguindau E, Kushekhar K, Zhang Q, Ogata Y, Gafken PR, Inamoto Y, Gracon A et al..  2016.  Proteomic characterization reveals that MMP-3 correlates with bronchiolitis obliterans syndrome following allogeneic hematopoietic cell and lung transplantation.. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 16(8):2342-51. Abstract
Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA et al..  2016.  Biomarker Panel for Chronic Graft-Versus-Host Disease.. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 34(22):2583-2590. Abstract

Year of Publication: 2015

Akil A, Zhang Q, Mumaw CL, Raiker N, Yu J, Velez de Mendizabal N, Haneline LS, Robertson KA, Skiles J, Diaz-Ricart M et al..  2015.  Biomarkers for Diagnosis and Prognosis of Sinusoidal Obstruction Syndrome after Hematopoietic Cell Transplantation.. Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation. 21(10):1739-45. Abstract
Hill JA, Sedlak RH, Zerr DM, Huang M-L, Yeung C, Myerson D, Jerome KR, Boeckh MJ.  2015.  Prevalence of chromosomally integrated human herpesvirus 6 in patients with human herpesvirus 6-central nervous system dysfunction.. Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation. 21(2):371-3. Abstract
Yu M, O'Leary RM, Kaz AM, Morris SM, Carter KT, Chak A, Chandar A, Willis JE, Moinova HR, Markowitz SD et al..  2015.  Methylated B3GAT2 and ZNF793 Are Potential Detection Biomarkers for Barrett's Esophagus.. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 24(12):1890-1897. Abstract

Year of Publication: 2014

Chevillet JR, Kang Q, Ruf IK, Briggs HA, Vojtech LN, Hughes SM, Cheng HH, Arroyo JD, Meredith EK, Gallichotte EN et al..  2014.  Quantitative and stoichiometric analysis of the microRNA content of exosomes.. Proceedings of the National Academy of Sciences of the United States of America. 111(41):14888-93. Abstract
Dvinge H, Ries RE, Ilagan JO, Stirewalt DL, Meshinchi S, Bradley RK.  2014.  Sample processing obscures cancer-specific alterations in leukemic transcriptomes.. Proceedings of the National Academy of Sciences of the United States of America. 111(47):16802-7. Abstract
Moser R, Xu C, Kao M, Annis J, Lerma LA, Schaupp CM, Gurley KE, Jang IS, Biktasova A, Yarbrough WG et al..  2014.  Functional kinomics identifies candidate therapeutic targets in head and neck cancer.. Clinical cancer research : an official journal of the American Association for Cancer Research. 20(16):4274-88. Abstract
O'Keefe DD, Thomas S, Edgar BA, Buttitta L.  2014.  Temporal regulation of Dpp signaling output in the Drosophila wing.. Developmental dynamics : an official publication of the American Association of Anatomists. 243(6):818-32. Abstract

Year of Publication: 2013

Ali M, Rincón-Arano H, Zhao W, Rothbart SB, Tong Q, Parkhurst SM, Strahl BD, Deng L-W, Groudine M, Kutateladze TG.  2013.  Molecular basis for chromatin binding and regulation of MLL5.. Proceedings of the National Academy of Sciences of the United States of America. 110(28):11296-301. Abstract
Compton AA, Malik HS, Emerman M.  2013.  Host gene evolution traces the evolutionary history of ancient primate lentiviruses.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 368(1626):20120496. Abstract
Malfavon-Borja R, Wu LI, Emerman M, Malik HS.  2013.  Birth, decay, and reconstruction of an ancient TRIMCyp gene fusion in primate genomes.. Proceedings of the National Academy of Sciences of the United States of America. 110(7):E583-92. Abstract
Spragg CJ, Emerman M.  2013.  Antagonism of SAMHD1 is actively maintained in natural infections of simian immunodeficiency virus.. Proceedings of the National Academy of Sciences of the United States of America. 110(52):21136-41. Abstract

Year of Publication: 2012

Rickerts V, Khot PD, Ko DL, Fredricks DN.  2012.  Enhanced fungal DNA-extraction from formalin-fixed, paraffin-embedded tissue specimens by application of thermal energy.. Medical mycology : official publication of the International Society for Human and Animal Mycology. 50(6):667-72. Abstract
Serrano NA, Xu C, Liu Y, Wang P, Fan W, Upton MP, Houck JR, Lohavanichbutr P, Kao M, Zhao LP et al..  2012.  Integrative Analysis in Oral Squamous Cell Carcinoma Reveals DNA Copy Number-Associated miRNAs Dysregulating Target Genes.. Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery. 147(3):501-8. Abstract

Year of Publication: 2011

Henikoff JG, Belsky JA, Krassovsky K, MacAlpine DM, Henikoff S.  2011.  Epigenome characterization at single base-pair resolution.. Proceedings of the National Academy of Sciences of the United States of America. 108(45):18318-23. Abstract
Johnson LG, Schwartz SM, Malkki M, Du Q, Petersdorf EW, Galloway DA, Madeleine MM.  2011.  Risk of cervical cancer associated with allergies and polymorphisms in genes in the chromosome 5 cytokine cluster.. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 20(1):199-207. Abstract