Filters: Author is Matsen, Frederick A [Clear All Filters]
Optimization of periprosthetic culture for diagnosis of Propionibacterium acnes prosthetic joint infection.. Journal of clinical microbiology. 49(7):2490-5.. 2011.
The evolution within us.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 370(1676). 2015.
PhyloSift: phylogenetic analysis of genomes and metagenomes.. PeerJ. 2:e243.. 2014.
Zoonotic simian foamy virus in Bangladesh reflects diverse patterns of transmission and co-infection. Emerging Microbes & Infections. 2. 2013.
Gene loss and adaptation to hominids underlie the ancient origin of HIV-1.. Cell host & microbe. 14(1):85-92.. 2013.
The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples. Journal of the Royal Statistical Society: Series B (Statistical Methodology). 74(3):569-592.. 2012.
The Prognosis for Improvement in Comfort and Function After the Ream-and-Run Arthroplasty for Glenohumeral Arthritis: An Analysis of 176 Consecutive Cases.. The Journal of bone and joint surgery. American volume. 94(14):e1021-9.. 2012.
Non-Human Primates Harbor Diverse Mammalian and Avian Astroviruses Including Those Associated with Human Infections.. PLoS pathogens. 11(11):e1005225.. 2015.
Risk of drug resistance among persons acquiring HIV within a randomized clinical trial of single- or dual-agent preexposure prophylaxis.. The Journal of infectious diseases. 211(8):1211-8.. 2015.
Low-frequency nevirapine resistance at multiple sites may predict treatment failure in infants on nevirapine-based treatment.. Journal of acquired immune deficiency syndromes (1999).. 2012.
Phylogenomic Analysis Reveals Dynamic Evolutionary History of the Drosophila Heterochromatin Protein 1 (HP1) Gene Family.. PLoS genetics. 8(6):e1002729.. 2012.
The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx.. Cell host & microbe. 11(2):194-204.. 2012.
Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots.. Algorithms for molecular biology : AMB. 7(1):8.. 2012.
A format for phylogenetic placements.. PloS one. 7(2):e31009.. 2012.
Ubiquity of synonymity: almost all large binary trees are not uniquely identified by their spectra or their immanantal polynomials.. Algorithms for molecular biology : AMB. 7(1):14.. 2012.
Minimizing the average distance to a closest leaf in a phylogenetic tree.. Systematic biology. 62(6):824-36.. 2013.
constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraints.. Journal of computational biology : a journal of computational molecular cell biology. 17(6):799-818.. 2010.
A Novel Bayesian Method for Detection of APOBEC3-Mediated Hypermutation and Its Application to Zoonotic Transmission of Simian Foamy Viruses.. PLoS computational biology. 10(2):e1003493.. 2014.
nestly--a framework for running software with nested parameter choices and aggregating results.. Bioinformatics (Oxford, England). 29(3):387-8.. 2013.
Quantifying evolutionary constraints on B-cell affinity maturation.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 370(1676). 2015.
The mean and variance of phylogenetic diversity under rarefaction.. Methods in ecology and evolution / British Ecological Society. 4(6):566-572.. 2013.
Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation.. PLoS computational biology. 12(1):e1004409.. 2016.
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