Filters: Author is Matsen, Frederick A [Clear All Filters]
Optimization of periprosthetic culture for diagnosis of Propionibacterium acnes prosthetic joint infection.. Journal of clinical microbiology. 49(7):2490-5.. 2011.
The evolution within us.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 370(1676). 2015.
PhyloSift: phylogenetic analysis of genomes and metagenomes.. PeerJ. 2:e243.. 2014.
Zoonotic simian foamy virus in Bangladesh reflects diverse patterns of transmission and co-infection. Emerging Microbes & Infections. 2. 2013.
Gene loss and adaptation to hominids underlie the ancient origin of HIV-1.. Cell host & microbe. 14(1):85-92.. 2013.
The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples. Journal of the Royal Statistical Society: Series B (Statistical Methodology). 74(3):569-592.. 2012.
The Prognosis for Improvement in Comfort and Function After the Ream-and-Run Arthroplasty for Glenohumeral Arthritis: An Analysis of 176 Consecutive Cases.. The Journal of bone and joint surgery. American volume. 94(14):e1021-9.. 2012.
Non-Human Primates Harbor Diverse Mammalian and Avian Astroviruses Including Those Associated with Human Infections.. PLoS pathogens. 11(11):e1005225.. 2015.
Low-frequency nevirapine resistance at multiple sites may predict treatment failure in infants on nevirapine-based treatment.. Journal of acquired immune deficiency syndromes (1999).. 2012.
Risk of drug resistance among persons acquiring HIV within a randomized clinical trial of single- or dual-agent preexposure prophylaxis.. The Journal of infectious diseases. 211(8):1211-8.. 2015.
Phylogenomic Analysis Reveals Dynamic Evolutionary History of the Drosophila Heterochromatin Protein 1 (HP1) Gene Family.. PLoS genetics. 8(6):e1002729.. 2012.
The Ability of Primate Lentiviruses to Degrade the Monocyte Restriction Factor SAMHD1 Preceded the Birth of the Viral Accessory Protein Vpx.. Cell host & microbe. 11(2):194-204.. 2012.
constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraints.. Journal of computational biology : a journal of computational molecular cell biology. 17(6):799-818.. 2010.
A Novel Bayesian Method for Detection of APOBEC3-Mediated Hypermutation and Its Application to Zoonotic Transmission of Simian Foamy Viruses.. PLoS computational biology. 10(2):e1003493.. 2014.
Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots.. Algorithms for molecular biology : AMB. 7(1):8.. 2012.
A format for phylogenetic placements.. PloS one. 7(2):e31009.. 2012.
Minimizing the average distance to a closest leaf in a phylogenetic tree.. Systematic biology. 62(6):824-36.. 2013.
Ubiquity of synonymity: almost all large binary trees are not uniquely identified by their spectra or their immanantal polynomials.. Algorithms for molecular biology : AMB. 7(1):14.. 2012.
Quantifying evolutionary constraints on B-cell affinity maturation.. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 370(1676). 2015.
nestly--a framework for running software with nested parameter choices and aggregating results.. Bioinformatics (Oxford, England). 29(3):387-8.. 2013.
The mean and variance of phylogenetic diversity under rarefaction.. Methods in ecology and evolution / British Ecological Society. 4(6):566-572.. 2013.
Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation.. PLoS computational biology. 12(1):e1004409.. 2016.
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